Analysis of interatomic Contacts of Structural Units in PDB entry:
9LWX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LWX entry

There are 4 chains in PDB entry 9LWX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 2232	PRO 2328
A	GLY 2236	PRO 2328
B	MET 2233	PRO 2328
C	ALA 2232	PRO 2328

There are 9 helices in PDB entry 9LWX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	2237	2241	Right-handed 310
Helix 2	AA2	D	2245	2249	Right-handed 310
Helix 3	AA3	A	2237	2241	Right-handed 310
Helix 4	AA4	A	2245	2249	Right-handed 310
Helix 5	AA5	A	2264	2267	Right-handed 310
Helix 6	AA6	B	2237	2241	Right-handed 310
Helix 7	AA7	B	2245	2249	Right-handed 310
Helix 8	AA8	C	2237	2241	Right-handed 310
Helix 9	AA9	C	2245	2249	Right-handed 310

There are 10 sheets in PDB entry 9LWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2242	2244	first strand
Strand 2	D	2257	2262	anti-parallel
Strand 3	D	2292	2299	anti-parallel
Strand 4	D	2281	2287	anti-parallel
Strand 5	B	2271	2276	anti-parallel
Strand 6	B	2303	2311	anti-parallel
Strand 7	B	2321	2326	anti-parallel
Strand 8	B	2251	2252	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2242	2244	first strand
Strand 2	D	2257	2262	anti-parallel
Strand 3	D	2292	2299	anti-parallel
Strand 4	D	2281	2287	anti-parallel
Strand 5	B	2271	2276	anti-parallel
Strand 6	B	2303	2311	anti-parallel
Strand 7	B	2314	2315	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2251	2252	first strand
Strand 2	D	2321	2326	parallel
Strand 3	D	2303	2311	anti-parallel
Strand 4	D	2314	2315	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2251	2252	first strand
Strand 2	D	2321	2326	parallel
Strand 3	D	2303	2311	anti-parallel
Strand 4	D	2271	2276	anti-parallel
Strand 5	B	2282	2287	anti-parallel
Strand 6	B	2292	2298	anti-parallel
Strand 7	B	2257	2262	anti-parallel
Strand 8	B	2242	2244	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2242	2244	first strand
Strand 2	A	2257	2262	anti-parallel
Strand 3	A	2292	2299	anti-parallel
Strand 4	A	2281	2287	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2251	2252	first strand
Strand 2	A	2321	2326	parallel
Strand 3	A	2303	2311	anti-parallel
Strand 4	A	2271	2276	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2251	2252	first strand
Strand 2	A	2321	2326	parallel
Strand 3	A	2303	2311	anti-parallel
Strand 4	A	2314	2315	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2242	2244	first strand
Strand 2	C	2257	2262	anti-parallel
Strand 3	C	2292	2298	anti-parallel
Strand 4	C	2282	2287	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2251	2252	first strand
Strand 2	C	2321	2326	parallel
Strand 3	C	2303	2311	anti-parallel
Strand 4	C	2271	2276	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2251	2252	first strand
Strand 2	C	2321	2326	parallel
Strand 3	C	2303	2311	anti-parallel
Strand 4	C	2314	2315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LWX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LWX