Analysis of interatomic Contacts of Structural Units in PDB entry:
9LX5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LX5 entry

There are 3 chains in PDB entry 9LX5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 28	HIS 355
B	VAL 31	LEU 354
C	VAL 29	LEU 357

There are 20 helices in PDB entry 9LX5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	50	Right-handed alpha
Helix 2	AA2	A	51	53	Right-handed 310
Helix 3	AA3	A	86	91	Right-handed alpha
Helix 4	AA4	A	179	184	Right-handed 310
Helix 5	AA5	A	210	215	Right-handed 310
Helix 6	AA6	A	232	239	Right-handed alpha
Helix 7	AA7	A	266	270	Right-handed 310
Helix 8	AA8	A	327	355	Right-handed alpha
Helix 9	AA9	B	32	52	Right-handed alpha
Helix 10	AB1	B	86	91	Right-handed alpha
Helix 11	AB2	B	120	124	Right-handed 310
Helix 12	AB3	B	181	185	Right-handed 310
Helix 13	AB4	B	232	237	Right-handed alpha
Helix 14	AB5	B	245	250	Right-handed alpha
Helix 15	AB6	B	327	354	Right-handed alpha
Helix 16	AB7	C	30	51	Right-handed alpha
Helix 17	AB8	C	86	91	Right-handed alpha
Helix 18	AB9	C	210	215	Right-handed alpha
Helix 19	AC1	C	242	247	Right-handed alpha
Helix 20	AC2	C	327	357	Right-handed alpha

There are 16 sheets in PDB entry 9LX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	67	first strand
Strand 2	A	186	195	anti-parallel
Strand 3	A	200	203	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	67	first strand
Strand 2	A	186	195	anti-parallel
Strand 3	A	229	231	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	302	324	anti-parallel
Strand 3	A	252	262	parallel
Strand 4	A	273	276	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	302	324	anti-parallel
Strand 3	A	291	299	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	157	164	anti-parallel
Strand 3	A	144	151	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	192	193	anti-parallel
Strand 3	B	202	203	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	83	85	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	313	317	anti-parallel
Strand 3	B	251	255	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	160	163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	298	first strand
Strand 2	B	303	311	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	192	195	anti-parallel
Strand 3	C	200	203	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	186	189	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	83	85	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	105	first strand
Strand 2	C	302	322	anti-parallel
Strand 3	C	251	260	parallel
Strand 4	C	273	277	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	302	322	anti-parallel
Strand 3	C	290	299	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	159	164	anti-parallel
Strand 3	C	144	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LX5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LX5