Analysis of interatomic Contacts of Structural Units in PDB entry:
9LXD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LXD entry

There are 7 chains in PDB entry 9LXD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	GLU 175	PHE 904
3	VAL 5	GLU 659
4	ASP 138	LEU 863
5	ARG 27	LEU 733
6	HIS 15	GLN 792
7	ALA 2	GLN 650
B	LYS 736	ILE 808

There are149 helices in PDB entry 9LXD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	188	205	Right-handed alpha
Helix 2	AA2	2	213	226	Right-handed alpha
Helix 3	AA3	2	234	241	Right-handed alpha
Helix 4	AA4	2	242	246	Right-handed 310
Helix 5	AA5	2	251	271	Right-handed alpha
Helix 6	AA6	2	272	277	Right-handed 310
Helix 7	AA7	2	293	297	Right-handed 310
Helix 8	AA8	2	298	302	Right-handed 310
Helix 9	AA9	2	459	470	Right-handed alpha
Helix 10	AB1	2	472	479	Right-handed alpha
Helix 11	AB2	2	488	501	Right-handed alpha
Helix 12	AB3	2	529	540	Right-handed alpha
Helix 13	AB4	2	574	579	Right-handed alpha
Helix 14	AB5	2	593	604	Right-handed alpha
Helix 15	AB6	2	632	636	Right-handed 310
Helix 16	AB7	2	642	648	Right-handed alpha
Helix 17	AB8	2	650	656	Right-handed alpha
Helix 18	AB9	2	670	686	Right-handed alpha
Helix 19	AC1	2	716	731	Right-handed alpha
Helix 20	AC2	2	740	754	Right-handed alpha
Helix 21	AC3	2	764	781	Right-handed alpha
Helix 22	AC4	2	787	804	Right-handed alpha
Helix 23	AC5	2	807	818	Right-handed alpha
Helix 24	AC6	2	828	852	Right-handed alpha
Helix 25	AC7	2	862	873	Right-handed alpha
Helix 26	AC8	2	877	883	Right-handed alpha
Helix 27	AC9	3	13	23	Right-handed alpha
Helix 28	AD1	3	31	43	Right-handed alpha
Helix 29	AD2	3	51	58	Right-handed alpha
Helix 30	AD3	3	61	68	Right-handed alpha
Helix 31	AD4	3	73	83	Right-handed alpha
Helix 32	AD5	3	280	289	Right-handed alpha
Helix 33	AD6	3	295	302	Right-handed alpha
Helix 34	AD7	3	310	323	Right-handed alpha
Helix 35	AD8	3	351	362	Right-handed alpha
Helix 36	AD9	3	415	428	Right-handed alpha
Helix 37	AE1	3	472	479	Right-handed alpha
Helix 38	AE2	3	490	505	Right-handed alpha
Helix 39	AE3	3	566	576	Right-handed alpha
Helix 40	AE4	3	583	598	Right-handed alpha
Helix 41	AE5	3	599	604	Right-handed alpha
Helix 42	AE6	3	614	632	Right-handed alpha
Helix 43	AE7	3	638	654	Right-handed alpha
Helix 44	AE8	4	161	172	Right-handed alpha
Helix 45	AE9	4	191	202	Right-handed alpha
Helix 46	AF1	4	213	219	Right-handed alpha
Helix 47	AF2	4	219	229	Right-handed alpha
Helix 48	AF3	4	229	249	Right-handed alpha
Helix 49	AF4	4	275	279	Right-handed 310
Helix 50	AF5	4	433	442	Right-handed alpha
Helix 51	AF6	4	444	454	Right-handed alpha
Helix 52	AF7	4	457	466	Right-handed alpha
Helix 53	AF8	4	473	486	Right-handed alpha
Helix 54	AF9	4	516	527	Right-handed alpha
Helix 55	AG1	4	561	567	Right-handed alpha
Helix 56	AG2	4	580	594	Right-handed alpha
Helix 57	AG3	4	619	623	Right-handed 310
Helix 58	AG4	4	629	635	Right-handed alpha
Helix 59	AG5	4	637	642	Right-handed alpha
Helix 60	AG6	4	655	672	Right-handed alpha
Helix 61	AG7	4	683	698	Right-handed alpha
Helix 62	AG8	4	703	720	Right-handed alpha
Helix 63	AG9	4	730	748	Right-handed alpha
Helix 64	AH1	4	754	773	Right-handed alpha
Helix 65	AH2	4	783	788	Right-handed alpha
Helix 66	AH3	4	793	813	Right-handed alpha
Helix 67	AH4	4	819	831	Right-handed alpha
Helix 68	AH5	4	836	850	Right-handed alpha
Helix 69	AH6	5	28	42	Right-handed alpha
Helix 70	AH7	5	54	66	Right-handed alpha
Helix 71	AH8	5	74	81	Right-handed alpha
Helix 72	AH9	5	81	91	Right-handed alpha
Helix 73	AI1	5	91	112	Right-handed alpha
Helix 74	AI2	5	136	140	Right-handed 310
Helix 75	AI3	5	141	145	Right-handed 310
Helix 76	AI4	5	232	236	Right-handed 310
Helix 77	AI5	5	306	311	Right-handed alpha
Helix 78	AI6	5	315	326	Right-handed alpha
Helix 79	AI7	5	327	329	Right-handed 310
Helix 80	AI8	5	330	335	Right-handed alpha
Helix 81	AI9	5	349	357	Right-handed alpha
Helix 82	AJ1	5	366	370	Right-handed 310
Helix 83	AJ2	5	387	398	Right-handed alpha
Helix 84	AJ3	5	432	437	Right-handed alpha
Helix 85	AJ4	5	447	450	Right-handed 310
Helix 86	AJ5	5	456	464	Right-handed alpha
Helix 87	AJ6	5	470	474	Right-handed 310
Helix 88	AJ7	5	555	568	Right-handed alpha
Helix 89	AJ8	5	575	596	Right-handed alpha
Helix 90	AJ9	5	609	627	Right-handed alpha
Helix 91	AK1	5	633	648	Right-handed alpha
Helix 92	AK2	5	668	683	Right-handed alpha
Helix 93	AK3	5	691	701	Right-handed alpha
Helix 94	AK4	5	704	719	Right-handed alpha
Helix 95	AK5	6	20	37	Right-handed alpha
Helix 96	AK6	6	44	53	Right-handed alpha
Helix 97	AK7	6	65	72	Right-handed alpha
Helix 98	AK8	6	72	82	Right-handed alpha
Helix 99	AK9	6	82	99	Right-handed alpha
Helix 100	AL1	6	100	102	Right-handed 310
Helix 101	AL2	6	122	126	Right-handed 310
Helix 102	AL3	6	127	131	Right-handed 310
Helix 103	AL4	6	321	328	Right-handed alpha
Helix 104	AL5	6	330	343	Right-handed alpha
Helix 105	AL6	6	345	355	Right-handed alpha
Helix 106	AL7	6	361	374	Right-handed alpha
Helix 107	AL8	6	401	413	Right-handed alpha
Helix 108	AL9	6	462	465	Right-handed 310
Helix 109	AM1	6	466	480	Right-handed alpha
Helix 110	AM2	6	515	520	Right-handed alpha
Helix 111	AM3	6	523	528	Right-handed alpha
Helix 112	AM4	6	541	558	Right-handed alpha
Helix 113	AM5	6	568	580	Right-handed alpha
Helix 114	AM6	6	587	605	Right-handed alpha
Helix 115	AM7	6	618	635	Right-handed alpha
Helix 116	AM8	6	641	656	Right-handed alpha
Helix 117	AM9	6	720	734	Right-handed alpha
Helix 118	AN1	6	735	739	Right-handed 310
Helix 119	AN2	6	744	756	Right-handed alpha
Helix 120	AN3	6	757	759	Right-handed 310
Helix 121	AN4	6	762	782	Right-handed alpha
Helix 122	AN5	7	5	19	Right-handed alpha
Helix 123	AN6	7	33	42	Right-handed alpha
Helix 124	AN7	7	52	59	Right-handed alpha
Helix 125	AN8	7	59	69	Right-handed alpha
Helix 126	AN9	7	69	85	Right-handed alpha
Helix 127	AO1	7	86	89	Right-handed 310
Helix 128	AO2	7	97	113	Right-handed alpha
Helix 129	AO3	7	148	152	Right-handed 310
Helix 130	AO4	7	153	157	Right-handed 310
Helix 131	AO5	7	208	214	Right-handed alpha
Helix 132	AO6	7	260	262	Right-handed 310
Helix 133	AO7	7	320	327	Right-handed alpha
Helix 134	AO8	7	331	339	Right-handed alpha
Helix 135	AO9	7	347	360	Right-handed alpha
Helix 136	AP1	7	390	398	Right-handed alpha
Helix 137	AP2	7	433	437	Right-handed 310
Helix 138	AP3	7	446	450	Right-handed 310
Helix 139	AP4	7	451	465	Right-handed alpha
Helix 140	AP5	7	508	514	Right-handed alpha
Helix 141	AP6	7	530	544	Right-handed alpha
Helix 142	AP7	7	555	567	Right-handed alpha
Helix 143	AP8	7	574	576	Right-handed 310
Helix 144	AP9	7	577	595	Right-handed alpha
Helix 145	AQ1	7	602	620	Right-handed alpha
Helix 146	AQ2	7	626	645	Right-handed alpha
Helix 147	AQ3	B	740	758	Right-handed alpha
Helix 148	AQ4	B	765	774	Right-handed alpha
Helix 149	AQ5	B	781	795	Right-handed alpha

There are 46 sheets in PDB entry 9LXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	229	233	first strand
Strand 2	2	282	286	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	291	292	first strand
Strand 2	2	559	562	first strand
Strand 3	2	374	379	first strand
Strand 4	2	393	398	anti-parallel
Strand 5	2	438	445	parallel
Strand 6	2	411	419	anti-parallel
Strand 7	2	305	316	anti-parallel
Strand 8	2	569	572	anti-parallel
Strand 9	2	559	562	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	544	547	first strand
Strand 2	2	583	587	parallel
Strand 3	2	625	630	parallel
Strand 4	2	519	523	parallel
Strand 5	2	659	663	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	608	612	first strand
Strand 2	2	617	621	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	858	861	first strand
Strand 2	2	899	902	anti-parallel
Strand 3	2	891	894	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	46	50	first strand
Strand 2	3	99	103	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	110	111	first strand
Strand 2	3	126	135	parallel
Strand 3	3	234	237	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	200	201	first strand
Strand 2	3	126	135	anti-parallel
Strand 3	3	391	394	anti-parallel
Strand 4	3	382	384	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	156	158	first strand
Strand 2	3	140	145	anti-parallel
Strand 3	3	192	194	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	156	158	first strand
Strand 2	3	140	145	anti-parallel
Strand 3	7	292	293	anti-parallel
Strand 4	7	286	287	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	327	328	first strand
Strand 2	3	334	335	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	365	369	first strand
Strand 2	3	405	409	parallel
Strand 3	3	447	452	parallel
Strand 4	3	341	345	parallel
Strand 5	3	481	485	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	430	434	first strand
Strand 2	3	439	443	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	581	582	first strand
Strand 2	3	636	637	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	207	208	first strand
Strand 2	4	259	260	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	282	288	first strand
Strand 2	4	387	397	anti-parallel
Strand 3	4	413	422	anti-parallel
Strand 4	4	371	374	parallel
Strand 5	4	350	353	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	298	299	first strand
Strand 2	4	346	347	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	312	316	first strand
Strand 2	4	301	306	anti-parallel
Strand 3	4	337	339	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	408	409	first strand
Strand 2	7	199	200	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	531	534	first strand
Strand 2	4	570	574	parallel
Strand 3	4	612	617	parallel
Strand 4	4	506	510	parallel
Strand 5	4	646	650	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	545	549	first strand
Strand 2	4	556	560	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	595	599	first strand
Strand 2	4	604	608	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	701	702	first strand
Strand 2	4	752	753	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	854	856	first strand
Strand 2	4	859	861	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	43	44	first strand
Strand 2	5	52	53	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	69	73	first strand
Strand 2	5	125	129	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	417	420	first strand
Strand 2	5	427	430	anti-parallel
Strand 3	5	148	159	anti-parallel
Strand 4	5	262	271	anti-parallel
Strand 5	5	292	296	anti-parallel
Strand 6	5	244	248	parallel
Strand 7	5	226	230	anti-parallel
Strand 8	5	148	159	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	178	183	first strand
Strand 2	5	162	172	anti-parallel
Strand 3	5	212	224	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	378	379	first strand
Strand 2	5	483	487	parallel
Strand 3	5	441	445	parallel
Strand 4	5	401	405	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	466	467	first strand
Strand 2	5	478	479	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	573	574	first strand
Strand 2	5	631	632	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	689	690	first strand
Strand 2	5	729	732	anti-parallel
Strand 3	5	721	724	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	60	64	first strand
Strand 2	6	111	115	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	134	136	first strand
Strand 2	6	245	252	anti-parallel
Strand 3	6	294	302	anti-parallel
Strand 4	6	223	228	parallel
Strand 5	6	200	209	anti-parallel
Strand 6	6	148	151	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	134	136	first strand
Strand 2	6	245	252	anti-parallel
Strand 3	6	294	302	anti-parallel
Strand 4	6	223	228	parallel
Strand 5	6	200	209	anti-parallel
Strand 6	6	140	144	anti-parallel
Strand 7	6	442	446	anti-parallel
Strand 8	6	431	435	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	164	169	first strand
Strand 2	6	153	158	anti-parallel
Strand 3	6	191	193	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	378	379	first strand
Strand 2	6	385	386	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	416	420	first strand
Strand 2	6	456	460	parallel
Strand 3	6	498	503	parallel
Strand 4	6	392	396	parallel
Strand 5	6	533	536	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	481	485	first strand
Strand 2	6	490	494	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	585	586	first strand
Strand 2	6	639	640	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	47	51	first strand
Strand 2	7	135	139	parallel

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There are 8 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	191	194	first strand
Strand 2	7	174	184	anti-parallel
Strand 3	7	220	238	anti-parallel
Strand 4	7	252	258	anti-parallel
Strand 5	7	295	305	parallel
Strand 6	7	270	280	anti-parallel
Strand 7	7	160	170	anti-parallel
Strand 8	7	220	238	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	401	404	first strand
Strand 2	7	441	444	parallel
Strand 3	7	483	486	parallel
Strand 4	7	377	381	parallel
Strand 5	7	517	521	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	416	421	first strand
Strand 2	7	426	431	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	466	471	first strand
Strand 2	7	474	479	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	764	first strand
Strand 2	B	804	807	anti-parallel
Strand 3	B	798	801	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LXD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LXD