Analysis of interatomic Contacts of Structural Units in PDB entry:
9LXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LXH entry

There are 3 chains in PDB entry 9LXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 727
B	MET 1	CYS 1254
C	MET 1	MET 1

There are 95 helices in PDB entry 9LXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	42	Right-handed alpha
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	80	93	Right-handed alpha
Helix 4	AA4	A	96	110	Right-handed alpha
Helix 5	AA5	A	114	122	Right-handed alpha
Helix 6	AA6	A	124	136	Right-handed alpha
Helix 7	AA7	A	140	169	Right-handed alpha
Helix 8	AA8	A	177	190	Right-handed alpha
Helix 9	AA9	A	194	212	Right-handed alpha
Helix 10	AB1	A	213	221	Right-handed alpha
Helix 11	AB2	A	224	234	Right-handed alpha
Helix 12	AB3	A	236	251	Right-handed alpha
Helix 13	AB4	A	255	270	Right-handed alpha
Helix 14	AB5	A	270	279	Right-handed alpha
Helix 15	AB6	A	287	310	Right-handed alpha
Helix 16	AB7	A	317	332	Right-handed alpha
Helix 17	AB8	A	337	342	Right-handed 310
Helix 18	AB9	A	344	357	Right-handed alpha
Helix 19	AC1	A	366	372	Right-handed 310
Helix 20	AC2	A	378	391	Right-handed alpha
Helix 21	AC3	A	391	403	Right-handed alpha
Helix 22	AC4	A	412	429	Right-handed alpha
Helix 23	AC5	A	442	447	Right-handed 310
Helix 24	AC6	A	450	471	Right-handed alpha
Helix 25	AC7	A	476	494	Right-handed alpha
Helix 26	AC8	A	498	509	Right-handed alpha
Helix 27	AC9	A	512	529	Right-handed alpha
Helix 28	AD1	A	533	540	Right-handed alpha
Helix 29	AD2	A	543	559	Right-handed alpha
Helix 30	AD3	A	622	627	Right-handed 310
Helix 31	AD4	A	634	639	Right-handed 310
Helix 32	AD5	A	658	674	Right-handed alpha
Helix 33	AD6	A	679	698	Right-handed alpha
Helix 34	AD7	A	699	702	Right-handed 310
Helix 35	AD8	B	84	106	Right-handed alpha
Helix 36	AD9	B	110	131	Right-handed alpha
Helix 37	AE1	B	137	159	Right-handed alpha
Helix 38	AE2	B	179	207	Right-handed alpha
Helix 39	AE3	B	209	219	Right-handed alpha
Helix 40	AE4	B	271	276	Right-handed alpha
Helix 41	AE5	B	285	290	Right-handed alpha
Helix 42	AE6	B	331	335	Right-handed 310
Helix 43	AE7	B	378	389	Right-handed alpha
Helix 44	AE8	B	409	414	Right-handed alpha
Helix 45	AE9	B	518	523	Right-handed alpha
Helix 46	AF1	B	537	544	Right-handed alpha
Helix 47	AF2	B	584	588	Right-handed 310
Helix 48	AF3	B	591	605	Right-handed alpha
Helix 49	AF4	B	634	642	Right-handed alpha
Helix 50	AF5	B	646	648	Right-handed 310
Helix 51	AF6	B	649	657	Right-handed alpha
Helix 52	AF7	B	658	660	Right-handed 310
Helix 53	AF8	B	661	668	Right-handed alpha
Helix 54	AF9	B	668	683	Right-handed alpha
Helix 55	AG1	B	686	705	Right-handed alpha
Helix 56	AG2	B	706	710	Right-handed 310
Helix 57	AG3	B	712	723	Right-handed alpha
Helix 58	AG4	B	728	743	Right-handed alpha
Helix 59	AG5	B	749	759	Right-handed alpha
Helix 60	AG6	B	759	779	Right-handed alpha
Helix 61	AG7	B	782	804	Right-handed alpha
Helix 62	AG8	B	809	819	Right-handed alpha
Helix 63	AG9	B	820	822	Right-handed 310
Helix 64	AH1	B	823	831	Right-handed alpha
Helix 65	AH2	B	832	847	Right-handed alpha
Helix 66	AH3	B	852	866	Right-handed alpha
Helix 67	AH4	B	870	874	Right-handed 310
Helix 68	AH5	B	877	891	Right-handed alpha
Helix 69	AH6	B	897	915	Right-handed alpha
Helix 70	AH7	B	921	931	Right-handed alpha
Helix 71	AH8	B	933	943	Right-handed alpha
Helix 72	AH9	B	949	964	Right-handed alpha
Helix 73	AI1	B	965	972	Right-handed alpha
Helix 74	AI2	B	978	998	Right-handed alpha
Helix 75	AI3	B	1006	1032	Right-handed alpha
Helix 76	AI4	B	1033	1037	Right-handed 310
Helix 77	AI5	B	1041	1055	Right-handed alpha
Helix 78	AI6	B	1065	1076	Right-handed alpha
Helix 79	AI7	B	1079	1093	Right-handed alpha
Helix 80	AI8	B	1097	1100	Right-handed 310
Helix 81	AI9	B	1101	1114	Right-handed alpha
Helix 82	AJ1	B	1118	1125	Right-handed alpha
Helix 83	AJ2	B	1125	1140	Right-handed alpha
Helix 84	AJ3	B	1144	1161	Right-handed alpha
Helix 85	AJ4	B	1166	1182	Right-handed alpha
Helix 86	AJ5	B	1185	1212	Right-handed alpha
Helix 87	AJ6	B	1218	1234	Right-handed alpha
Helix 88	AJ7	B	1237	1254	Right-handed alpha
Helix 89	AJ8	C	15	26	Right-handed alpha
Helix 90	AJ9	C	64	71	Right-handed alpha
Helix 91	AK1	C	86	105	Right-handed alpha
Helix 92	AK2	C	117	121	Right-handed 310
Helix 93	AK3	C	122	131	Right-handed alpha
Helix 94	AK4	C	138	149	Right-handed alpha
Helix 95	AK5	C	164	178	Right-handed alpha

There are 13 sheets in PDB entry 9LXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	17	22	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	78	79	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	575	579	anti-parallel
Strand 3	A	586	588	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	641	646	anti-parallel
Strand 3	A	650	655	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	56	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	224	226	anti-parallel
Strand 3	B	279	281	anti-parallel
Strand 4	B	426	428	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	398	401	anti-parallel
Strand 3	B	344	345	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	261	262	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	295	304	anti-parallel
Strand 4	B	318	328	anti-parallel
Strand 5	B	349	350	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	515	first strand
Strand 2	B	445	454	anti-parallel
Strand 3	B	619	627	anti-parallel
Strand 4	B	565	569	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	496	first strand
Strand 2	B	468	474	anti-parallel
Strand 3	B	525	532	anti-parallel
Strand 4	B	546	553	anti-parallel
Strand 5	B	572	573	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	78	83	parallel
Strand 3	C	110	115	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	46	first strand
Strand 2	C	49	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LXH