Analysis of interatomic Contacts of Structural Units in PDB entry:
9LY3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LY3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 9LY3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1THR 33
B
 THR 6LYS 357
C
 VAL 5LYS 219
E
 ILE 3GLY 213
R
 VAL 31CYS 518
R
 ALA 521ALA 521
R
 LEU 525ALA 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9LY3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 32Right-handed alpha
Helix 2
AA2
B
44 49Right-handed alpha
Helix 3
AA3
B
65 69Right-handed 310
Helix 4
AA4
B
98 109Right-handed alpha
Helix 5
AA5
B
278 282Right-handed 310
Helix 6
AA6
C
90 94Right-handed 310
Helix 7
AA7
C
166 168Right-handed 310
Helix 8
AA8
E
80 84Right-handed 310
Helix 9
AA9
E
122 128Right-handed alpha
Helix 10
AB1
E
184 190Right-handed alpha
Helix 11
AB2
R
33 56Right-handed alpha
Helix 12
AB3
R
173 175Right-handed 310
Helix 13
AB4
R
176 212Right-handed alpha
Helix 14
AB5
R
213 216Right-handed 310
Helix 15
AB6
R
217 245Right-handed alpha
Helix 16
AB7
R
277 311Right-handed alpha
Helix 17
AB8
R
317 347Right-handed alpha
Helix 18
AB9
R
358 388Right-handed alpha
Helix 19
AC1
R
402 407Right-handed alpha
Helix 20
AC2
R
407 418Right-handed alpha
Helix 21
AC3
R
419 425Right-handed 310
Helix 22
AC4
R
434 460Right-handed alpha
Helix 23
AC5
R
463 473Right-handed alpha
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There are 16 sheets in PDB entry 9LY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
19 22anti-parallel
Strand 4
B
7 11anti-parallel
Strand 5
R
521 524anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
164 171parallel
Strand 3
B
141 151anti-parallel
Strand 4
B
52 62anti-parallel
Strand 5
B
77 85anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
288 290anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 186first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
214 221anti-parallel
Strand 4
B
267 274anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
343 351parallel
Strand 3
B
317 327anti-parallel
Strand 4
B
231 241anti-parallel
Strand 5
B
247 258anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 10first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
71 76anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
117 121parallel
Strand 3
C
95 103anti-parallel
Strand 4
C
35 42anti-parallel
Strand 5
C
48 55anti-parallel
Strand 6
C
60 63anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
117 121parallel
Strand 3
C
95 103anti-parallel
Strand 4
C
112 113anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
146 155anti-parallel
Strand 3
C
186 194anti-parallel
Strand 4
C
173 175anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
146 155anti-parallel
Strand 3
C
186 194anti-parallel
Strand 4
C
179 180anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 164first strand
Strand 2
C
206 210anti-parallel
Strand 3
C
215 219anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 26anti-parallel
Strand 3
E
71 78anti-parallel
Strand 4
E
64 68anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
103 107parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
46 50anti-parallel
Strand 6
E
54 55anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
103 107parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
98 99anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 119first strand
Strand 2
E
130 136anti-parallel
Strand 3
E
175 183anti-parallel
Strand 4
E
161 165anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
147 151first strand
Strand 2
E
192 197anti-parallel
Strand 3
E
206 211anti-parallel
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