Analysis of interatomic Contacts of Structural Units in PDB entry:
9LY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LY6 entry

There are 5 chains in PDB entry 9LY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 29THR 456
B
 GLN 1PRO 218
C
 ASP 1CYS 213
D
 GLN 1PRO 218
E
 ASP 1CYS 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9LY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
96 101Right-handed alpha
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
186 188Right-handed 310
Helix 5
AA5
A
277 280Right-handed 310
Helix 6
AA6
A
314 319Right-handed alpha
Helix 7
AA7
A
331 335Right-handed 310
Helix 8
AA8
B
28 32Right-handed 310
Helix 9
AA9
B
87 91Right-handed 310
Helix 10
AB1
B
161 163Right-handed 310
Helix 11
AB2
B
192 194Right-handed 310
Helix 12
AB3
C
78 82Right-handed 310
Helix 13
AB4
D
87 91Right-handed 310
Helix 14
AB5
D
161 163Right-handed 310
Helix 15
AB6
D
192 194Right-handed 310
Helix 16
AB7
E
78 82Right-handed 310
Helix 17
AB8
E
120 125Right-handed alpha
Helix 18
AB9
E
182 188Right-handed alpha
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There are 32 sheets in PDB entry 9LY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
51 52anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
129 139parallel
Strand 3
A
118 125anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
75 80anti-parallel
Strand 6
A
83 87anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
107 109anti-parallel
Strand 3
A
93 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
160 170anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
190 196anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
216 224anti-parallel
Strand 3
A
229 237anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
269 270anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
347 357parallel
Strand 3
A
336 343anti-parallel
Strand 4
A
282 287anti-parallel
Strand 5
A
293 298anti-parallel
Strand 6
A
301 305anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
325 327anti-parallel
Strand 3
A
311 312anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 368first strand
Strand 2
A
378 388anti-parallel
Strand 3
A
420 429anti-parallel
Strand 4
A
408 414anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
434 442anti-parallel
Strand 3
A
447 455anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
59 60anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
105 108anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
140 150anti-parallel
Strand 3
B
181 190anti-parallel
Strand 4
B
168 170anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
140 150anti-parallel
Strand 3
B
181 190anti-parallel
Strand 4
B
174 175anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
199 205anti-parallel
Strand 3
B
210 216anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
61 66anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
101 104parallel
Strand 3
C
84 89anti-parallel
Strand 4
C
32 37anti-parallel
Strand 5
C
44 48anti-parallel
Strand 6
C
52 53anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
101 104parallel
Strand 3
C
84 89anti-parallel
Strand 4
C
96 97anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 117first strand
Strand 2
C
130 138anti-parallel
Strand 3
C
172 179anti-parallel
Strand 4
C
158 162anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 153first strand
Strand 2
C
143 149anti-parallel
Strand 3
C
190 197anti-parallel
Strand 4
C
204 209anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
112 116parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
59 60anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
112 116parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
105 108anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 129first strand
Strand 2
D
140 150anti-parallel
Strand 3
D
181 190anti-parallel
Strand 4
D
168 170anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 129first strand
Strand 2
D
140 150anti-parallel
Strand 3
D
181 190anti-parallel
Strand 4
D
174 175anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
156 159first strand
Strand 2
D
199 205anti-parallel
Strand 3
D
210 216anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
20 25anti-parallel
Strand 3
E
69 74anti-parallel
Strand 4
E
61 66anti-parallel
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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
101 104parallel
Strand 3
E
84 89anti-parallel
Strand 4
E
32 37anti-parallel
Strand 5
E
44 48anti-parallel
Strand 6
E
52 53anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
101 104parallel
Strand 3
E
84 89anti-parallel
Strand 4
E
96 97anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 117first strand
Strand 2
E
128 138anti-parallel
Strand 3
E
172 181anti-parallel
Strand 4
E
158 162anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
152 153first strand
Strand 2
E
144 149anti-parallel
Strand 3
E
190 196anti-parallel
Strand 4
E
207 209anti-parallel
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