Analysis of interatomic Contacts of Structural Units in PDB entry:
9LYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LYJ entry

There are 3 chains in PDB entry 9LYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	PHE 1023
D	MET 1	PHE 1023
E	MET 1	PHE 1023

There are117 helices in PDB entry 9LYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1	7	Right-handed alpha
Helix 2	AA2	C	8	30	Right-handed alpha
Helix 3	AA3	C	53	68	Right-handed alpha
Helix 4	AA4	C	99	115	Right-handed alpha
Helix 5	AA5	C	116	118	Right-handed 310
Helix 6	AA6	C	119	126	Right-handed alpha
Helix 7	AA7	C	150	162	Right-handed alpha
Helix 8	AA8	C	162	168	Right-handed alpha
Helix 9	AA9	C	189	196	Right-handed alpha
Helix 10	AB1	C	199	211	Right-handed alpha
Helix 11	AB2	C	242	248	Right-handed alpha
Helix 12	AB3	C	298	314	Right-handed alpha
Helix 13	AB4	C	315	317	Right-handed 310
Helix 14	AB5	C	329	360	Right-handed alpha
Helix 15	AB6	C	361	387	Right-handed alpha
Helix 16	AB7	C	391	403	Right-handed alpha
Helix 17	AB8	C	405	424	Right-handed alpha
Helix 18	AB9	C	426	435	Right-handed alpha
Helix 19	AC1	C	441	453	Right-handed alpha
Helix 20	AC2	C	454	459	Right-handed 310
Helix 21	AC3	C	461	496	Right-handed alpha
Helix 22	AC4	C	540	555	Right-handed alpha
Helix 23	AC5	C	581	600	Right-handed alpha
Helix 24	AC6	C	641	654	Right-handed alpha
Helix 25	AC7	C	689	706	Right-handed alpha
Helix 26	AC8	C	730	737	Right-handed alpha
Helix 27	AC9	C	740	754	Right-handed alpha
Helix 28	AD1	C	775	778	Right-handed 310
Helix 29	AD2	C	780	786	Right-handed 310
Helix 30	AD3	C	834	848	Right-handed alpha
Helix 31	AD4	C	859	869	Right-handed alpha
Helix 32	AD5	C	870	889	Right-handed alpha
Helix 33	AD6	C	894	899	Right-handed 310
Helix 34	AD7	C	902	910	Right-handed alpha
Helix 35	AD8	C	922	948	Right-handed alpha
Helix 36	AD9	C	963	968	Right-handed alpha
Helix 37	AE1	C	969	985	Right-handed alpha
Helix 38	AE2	C	995	997	Right-handed 310
Helix 39	AE3	C	998	1023	Right-handed alpha
Helix 40	AE4	D	2	7	Right-handed alpha
Helix 41	AE5	D	8	30	Right-handed alpha
Helix 42	AE6	D	53	68	Right-handed alpha
Helix 43	AE7	D	99	115	Right-handed alpha
Helix 44	AE8	D	116	118	Right-handed 310
Helix 45	AE9	D	119	126	Right-handed alpha
Helix 46	AF1	D	150	162	Right-handed alpha
Helix 47	AF2	D	162	168	Right-handed alpha
Helix 48	AF3	D	189	196	Right-handed alpha
Helix 49	AF4	D	199	211	Right-handed alpha
Helix 50	AF5	D	242	248	Right-handed alpha
Helix 51	AF6	D	298	314	Right-handed alpha
Helix 52	AF7	D	315	317	Right-handed 310
Helix 53	AF8	D	329	360	Right-handed alpha
Helix 54	AF9	D	361	387	Right-handed alpha
Helix 55	AG1	D	391	403	Right-handed alpha
Helix 56	AG2	D	405	424	Right-handed alpha
Helix 57	AG3	D	426	435	Right-handed alpha
Helix 58	AG4	D	441	453	Right-handed alpha
Helix 59	AG5	D	454	459	Right-handed 310
Helix 60	AG6	D	461	496	Right-handed alpha
Helix 61	AG7	D	540	555	Right-handed alpha
Helix 62	AG8	D	581	600	Right-handed alpha
Helix 63	AG9	D	641	654	Right-handed alpha
Helix 64	AH1	D	689	706	Right-handed alpha
Helix 65	AH2	D	730	737	Right-handed alpha
Helix 66	AH3	D	740	754	Right-handed alpha
Helix 67	AH4	D	775	778	Right-handed 310
Helix 68	AH5	D	780	786	Right-handed 310
Helix 69	AH6	D	834	848	Right-handed alpha
Helix 70	AH7	D	859	869	Right-handed alpha
Helix 71	AH8	D	870	889	Right-handed alpha
Helix 72	AH9	D	894	899	Right-handed 310
Helix 73	AI1	D	902	910	Right-handed alpha
Helix 74	AI2	D	922	948	Right-handed alpha
Helix 75	AI3	D	963	968	Right-handed alpha
Helix 76	AI4	D	969	985	Right-handed alpha
Helix 77	AI5	D	995	997	Right-handed 310
Helix 78	AI6	D	998	1023	Right-handed alpha
Helix 79	AI7	E	2	7	Right-handed alpha
Helix 80	AI8	E	8	30	Right-handed alpha
Helix 81	AI9	E	53	68	Right-handed alpha
Helix 82	AJ1	E	99	115	Right-handed alpha
Helix 83	AJ2	E	116	118	Right-handed 310
Helix 84	AJ3	E	119	126	Right-handed alpha
Helix 85	AJ4	E	150	162	Right-handed alpha
Helix 86	AJ5	E	162	168	Right-handed alpha
Helix 87	AJ6	E	189	196	Right-handed alpha
Helix 88	AJ7	E	199	211	Right-handed alpha
Helix 89	AJ8	E	242	248	Right-handed alpha
Helix 90	AJ9	E	298	314	Right-handed alpha
Helix 91	AK1	E	315	317	Right-handed 310
Helix 92	AK2	E	329	360	Right-handed alpha
Helix 93	AK3	E	361	387	Right-handed alpha
Helix 94	AK4	E	391	403	Right-handed alpha
Helix 95	AK5	E	405	424	Right-handed alpha
Helix 96	AK6	E	426	435	Right-handed alpha
Helix 97	AK7	E	441	453	Right-handed alpha
Helix 98	AK8	E	454	459	Right-handed 310
Helix 99	AK9	E	461	496	Right-handed alpha
Helix 100	AL1	E	540	555	Right-handed alpha
Helix 101	AL2	E	581	600	Right-handed alpha
Helix 102	AL3	E	641	654	Right-handed alpha
Helix 103	AL4	E	689	706	Right-handed alpha
Helix 104	AL5	E	730	737	Right-handed alpha
Helix 105	AL6	E	740	754	Right-handed alpha
Helix 106	AL7	E	775	778	Right-handed 310
Helix 107	AL8	E	780	786	Right-handed 310
Helix 108	AL9	E	834	848	Right-handed alpha
Helix 109	AM1	E	859	869	Right-handed alpha
Helix 110	AM2	E	870	889	Right-handed alpha
Helix 111	AM3	E	894	899	Right-handed 310
Helix 112	AM4	E	902	910	Right-handed alpha
Helix 113	AM5	E	922	948	Right-handed alpha
Helix 114	AM6	E	963	968	Right-handed alpha
Helix 115	AM7	E	969	985	Right-handed alpha
Helix 116	AM8	E	995	997	Right-handed 310
Helix 117	AM9	E	998	1023	Right-handed alpha

There are 24 sheets in PDB entry 9LYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	813	817	anti-parallel
Strand 6	C	820	829	anti-parallel
Strand 7	C	711	716	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	813	817	anti-parallel
Strand 6	C	820	829	anti-parallel
Strand 7	C	678	683	anti-parallel
Strand 8	C	856	857	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	321	328	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	284	293	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	604	611	anti-parallel
Strand 5	C	622	629	anti-parallel
Strand 6	C	569	575	anti-parallel
Strand 7	C	660	664	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	765	773	parallel
Strand 4	C	755	762	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	232	235	anti-parallel
Strand 3	D	722	729	parallel
Strand 4	D	803	810	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	803	810	first strand
Strand 2	C	722	729	anti-parallel
Strand 3	E	232	235	parallel
Strand 4	E	218	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	790	first strand
Strand 2	C	796	798	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	75	83	anti-parallel
Strand 5	D	813	817	anti-parallel
Strand 6	D	820	829	anti-parallel
Strand 7	D	711	716	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	75	83	anti-parallel
Strand 5	D	813	817	anti-parallel
Strand 6	D	820	829	anti-parallel
Strand 7	D	678	683	anti-parallel
Strand 8	D	856	857	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	177	first strand
Strand 2	D	284	293	anti-parallel
Strand 3	D	138	144	anti-parallel
Strand 4	D	321	328	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	177	first strand
Strand 2	D	284	293	anti-parallel
Strand 3	D	278	281	anti-parallel
Strand 4	D	604	611	anti-parallel
Strand 5	D	622	629	anti-parallel
Strand 6	D	569	575	anti-parallel
Strand 7	D	660	664	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	272	first strand
Strand 2	D	182	188	anti-parallel
Strand 3	D	765	773	parallel
Strand 4	D	755	762	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	E	722	729	parallel
Strand 4	E	803	810	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	253	first strand
Strand 2	D	259	261	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	788	790	first strand
Strand 2	D	796	798	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	42	48	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	75	83	anti-parallel
Strand 5	E	813	817	anti-parallel
Strand 6	E	820	829	anti-parallel
Strand 7	E	711	716	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	42	48	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	75	83	anti-parallel
Strand 5	E	813	817	anti-parallel
Strand 6	E	820	829	anti-parallel
Strand 7	E	678	683	anti-parallel
Strand 8	E	856	857	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	177	first strand
Strand 2	E	284	293	anti-parallel
Strand 3	E	138	144	anti-parallel
Strand 4	E	321	328	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	177	first strand
Strand 2	E	284	293	anti-parallel
Strand 3	E	278	281	anti-parallel
Strand 4	E	604	611	anti-parallel
Strand 5	E	622	629	anti-parallel
Strand 6	E	569	575	anti-parallel
Strand 7	E	660	664	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	272	first strand
Strand 2	E	182	188	anti-parallel
Strand 3	E	765	773	parallel
Strand 4	E	755	762	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	253	first strand
Strand 2	E	259	261	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	788	790	first strand
Strand 2	E	796	798	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LYJ