Analysis of interatomic Contacts of Structural Units in PDB entry:
9LYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LYQ entry

There are 3 chains in PDB entry 9LYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ALA 1040
C	MET 1	ALA 1040
D	MET 1	ALA 1040

There are105 helices in PDB entry 9LYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	18	Right-handed 310
Helix 2	AA2	B	19	39	Right-handed alpha
Helix 3	AA3	B	64	72	Right-handed alpha
Helix 4	AA4	B	72	82	Right-handed alpha
Helix 5	AA5	B	109	124	Right-handed alpha
Helix 6	AA6	B	159	170	Right-handed alpha
Helix 7	AA7	B	170	178	Right-handed alpha
Helix 8	AA8	B	199	206	Right-handed alpha
Helix 9	AA9	B	209	221	Right-handed alpha
Helix 10	AB1	B	246	253	Right-handed alpha
Helix 11	AB2	B	301	320	Right-handed alpha
Helix 12	AB3	B	332	363	Right-handed alpha
Helix 13	AB4	B	364	381	Right-handed alpha
Helix 14	AB5	B	382	390	Right-handed alpha
Helix 15	AB6	B	394	425	Right-handed alpha
Helix 16	AB7	B	428	459	Right-handed alpha
Helix 17	AB8	B	462	498	Right-handed alpha
Helix 18	AB9	B	501	506	Right-handed alpha
Helix 19	AC1	B	508	533	Right-handed alpha
Helix 20	AC2	B	535	557	Right-handed alpha
Helix 21	AC3	B	581	597	Right-handed alpha
Helix 22	AC4	B	636	649	Right-handed alpha
Helix 23	AC5	B	683	690	Right-handed alpha
Helix 24	AC6	B	690	697	Right-handed alpha
Helix 25	AC7	B	723	728	Right-handed alpha
Helix 26	AC8	B	733	746	Right-handed alpha
Helix 27	AC9	B	773	779	Right-handed 310
Helix 28	AD1	B	827	842	Right-handed alpha
Helix 29	AD2	B	854	886	Right-handed alpha
Helix 30	AD3	B	888	896	Right-handed alpha
Helix 31	AD4	B	897	913	Right-handed alpha
Helix 32	AD5	B	917	950	Right-handed alpha
Helix 33	AD6	B	952	984	Right-handed alpha
Helix 34	AD7	B	989	992	Right-handed 310
Helix 35	AD8	B	993	1039	Right-handed alpha
Helix 36	AD9	C	10	18	Right-handed 310
Helix 37	AE1	C	19	39	Right-handed alpha
Helix 38	AE2	C	64	72	Right-handed alpha
Helix 39	AE3	C	72	82	Right-handed alpha
Helix 40	AE4	C	109	124	Right-handed alpha
Helix 41	AE5	C	159	170	Right-handed alpha
Helix 42	AE6	C	170	178	Right-handed alpha
Helix 43	AE7	C	199	206	Right-handed alpha
Helix 44	AE8	C	209	221	Right-handed alpha
Helix 45	AE9	C	246	253	Right-handed alpha
Helix 46	AF1	C	301	320	Right-handed alpha
Helix 47	AF2	C	332	363	Right-handed alpha
Helix 48	AF3	C	364	381	Right-handed alpha
Helix 49	AF4	C	382	390	Right-handed alpha
Helix 50	AF5	C	394	425	Right-handed alpha
Helix 51	AF6	C	428	459	Right-handed alpha
Helix 52	AF7	C	462	498	Right-handed alpha
Helix 53	AF8	C	501	506	Right-handed alpha
Helix 54	AF9	C	508	533	Right-handed alpha
Helix 55	AG1	C	535	557	Right-handed alpha
Helix 56	AG2	C	581	597	Right-handed alpha
Helix 57	AG3	C	636	649	Right-handed alpha
Helix 58	AG4	C	683	690	Right-handed alpha
Helix 59	AG5	C	690	697	Right-handed alpha
Helix 60	AG6	C	723	728	Right-handed alpha
Helix 61	AG7	C	733	746	Right-handed alpha
Helix 62	AG8	C	773	779	Right-handed 310
Helix 63	AG9	C	827	842	Right-handed alpha
Helix 64	AH1	C	854	886	Right-handed alpha
Helix 65	AH2	C	888	896	Right-handed alpha
Helix 66	AH3	C	897	913	Right-handed alpha
Helix 67	AH4	C	917	950	Right-handed alpha
Helix 68	AH5	C	952	984	Right-handed alpha
Helix 69	AH6	C	989	992	Right-handed 310
Helix 70	AH7	C	993	1039	Right-handed alpha
Helix 71	AH8	D	10	18	Right-handed 310
Helix 72	AH9	D	19	39	Right-handed alpha
Helix 73	AI1	D	64	72	Right-handed alpha
Helix 74	AI2	D	72	82	Right-handed alpha
Helix 75	AI3	D	109	124	Right-handed alpha
Helix 76	AI4	D	159	170	Right-handed alpha
Helix 77	AI5	D	170	178	Right-handed alpha
Helix 78	AI6	D	199	206	Right-handed alpha
Helix 79	AI7	D	209	221	Right-handed alpha
Helix 80	AI8	D	246	253	Right-handed alpha
Helix 81	AI9	D	301	320	Right-handed alpha
Helix 82	AJ1	D	332	363	Right-handed alpha
Helix 83	AJ2	D	364	381	Right-handed alpha
Helix 84	AJ3	D	382	387	Right-handed alpha
Helix 85	AJ4	D	394	425	Right-handed alpha
Helix 86	AJ5	D	428	459	Right-handed alpha
Helix 87	AJ6	D	462	498	Right-handed alpha
Helix 88	AJ7	D	501	506	Right-handed alpha
Helix 89	AJ8	D	508	533	Right-handed alpha
Helix 90	AJ9	D	535	557	Right-handed alpha
Helix 91	AK1	D	581	597	Right-handed alpha
Helix 92	AK2	D	636	649	Right-handed alpha
Helix 93	AK3	D	683	690	Right-handed alpha
Helix 94	AK4	D	690	697	Right-handed alpha
Helix 95	AK5	D	723	728	Right-handed alpha
Helix 96	AK6	D	733	746	Right-handed alpha
Helix 97	AK7	D	773	779	Right-handed 310
Helix 98	AK8	D	827	842	Right-handed alpha
Helix 99	AK9	D	854	886	Right-handed alpha
Helix 100	AL1	D	888	896	Right-handed alpha
Helix 101	AL2	D	897	913	Right-handed alpha
Helix 102	AL3	D	917	950	Right-handed alpha
Helix 103	AL4	D	952	984	Right-handed alpha
Helix 104	AL5	D	989	992	Right-handed 310
Helix 105	AL6	D	993	1039	Right-handed alpha

There are 24 sheets in PDB entry 9LYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	53	57	anti-parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	86	94	anti-parallel
Strand 5	B	806	810	anti-parallel
Strand 6	B	813	821	anti-parallel
Strand 7	B	705	709	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	53	57	anti-parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	86	94	anti-parallel
Strand 5	B	806	810	anti-parallel
Strand 6	B	813	821	anti-parallel
Strand 7	B	675	680	anti-parallel
Strand 8	B	849	852	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	287	294	anti-parallel
Strand 3	B	149	155	anti-parallel
Strand 4	B	324	331	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	287	294	anti-parallel
Strand 3	B	281	284	anti-parallel
Strand 4	B	602	609	anti-parallel
Strand 5	B	621	627	anti-parallel
Strand 6	B	569	575	anti-parallel
Strand 7	B	655	660	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	275	first strand
Strand 2	B	192	198	anti-parallel
Strand 3	B	759	766	parallel
Strand 4	B	749	754	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	D	715	722	parallel
Strand 3	D	796	803	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	258	first strand
Strand 2	B	261	264	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	796	803	first strand
Strand 2	B	715	722	anti-parallel
Strand 3	C	238	240	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	782	first strand
Strand 2	B	790	791	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	139	first strand
Strand 2	C	53	57	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	86	94	anti-parallel
Strand 5	C	807	810	anti-parallel
Strand 6	C	813	821	anti-parallel
Strand 7	C	705	709	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	139	first strand
Strand 2	C	53	57	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	86	94	anti-parallel
Strand 5	C	807	810	anti-parallel
Strand 6	C	813	821	anti-parallel
Strand 7	C	675	680	anti-parallel
Strand 8	C	849	852	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	287	294	anti-parallel
Strand 3	C	149	155	anti-parallel
Strand 4	C	324	331	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	287	294	anti-parallel
Strand 3	C	281	284	anti-parallel
Strand 4	C	602	609	anti-parallel
Strand 5	C	621	627	anti-parallel
Strand 6	C	569	575	anti-parallel
Strand 7	C	655	660	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	275	first strand
Strand 2	C	192	198	anti-parallel
Strand 3	C	759	766	parallel
Strand 4	C	749	754	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	258	first strand
Strand 2	C	261	264	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	796	803	first strand
Strand 2	C	715	722	anti-parallel
Strand 3	D	238	240	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	782	first strand
Strand 2	C	790	791	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	53	57	anti-parallel
Strand 3	D	97	104	anti-parallel
Strand 4	D	86	94	anti-parallel
Strand 5	D	807	810	anti-parallel
Strand 6	D	813	821	anti-parallel
Strand 7	D	705	709	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	53	57	anti-parallel
Strand 3	D	97	104	anti-parallel
Strand 4	D	86	94	anti-parallel
Strand 5	D	807	810	anti-parallel
Strand 6	D	813	821	anti-parallel
Strand 7	D	675	680	anti-parallel
Strand 8	D	849	852	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	187	first strand
Strand 2	D	287	294	anti-parallel
Strand 3	D	149	155	anti-parallel
Strand 4	D	324	331	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	187	first strand
Strand 2	D	287	294	anti-parallel
Strand 3	D	281	284	anti-parallel
Strand 4	D	602	609	anti-parallel
Strand 5	D	621	627	anti-parallel
Strand 6	D	569	575	anti-parallel
Strand 7	D	655	660	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	275	first strand
Strand 2	D	192	198	anti-parallel
Strand 3	D	759	766	parallel
Strand 4	D	749	754	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	258	first strand
Strand 2	D	261	264	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	781	782	first strand
Strand 2	D	790	791	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LYQ