Analysis of interatomic Contacts of Structural Units in PDB entry:
9LYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LYU entry

There are 2 chains in PDB entry 9LYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	HIS 485
B	MET 1	HIS 485

There are 39 helices in PDB entry 9LYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	64	Right-handed alpha
Helix 2	AA2	A	68	70	Right-handed 310
Helix 3	AA3	A	106	116	Right-handed alpha
Helix 4	AA4	A	118	127	Right-handed alpha
Helix 5	AA5	A	134	146	Right-handed alpha
Helix 6	AA6	A	148	155	Right-handed alpha
Helix 7	AA7	A	162	172	Right-handed alpha
Helix 8	AA8	A	181	185	Right-handed alpha
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	208	212	Right-handed 310
Helix 11	AB2	A	242	251	Right-handed alpha
Helix 12	AB3	A	305	315	Right-handed alpha
Helix 13	AB4	A	322	328	Right-handed alpha
Helix 14	AB5	A	365	388	Right-handed alpha
Helix 15	AB6	A	398	402	Right-handed 310
Helix 16	AB7	A	403	415	Right-handed alpha
Helix 17	AB8	A	425	439	Right-handed alpha
Helix 18	AB9	A	443	451	Right-handed 310
Helix 19	AC1	A	462	482	Right-handed alpha
Helix 20	AC2	B	46	64	Right-handed alpha
Helix 21	AC3	B	68	70	Right-handed 310
Helix 22	AC4	B	106	116	Right-handed alpha
Helix 23	AC5	B	118	127	Right-handed alpha
Helix 24	AC6	B	134	146	Right-handed alpha
Helix 25	AC7	B	148	155	Right-handed alpha
Helix 26	AC8	B	162	172	Right-handed alpha
Helix 27	AC9	B	181	185	Right-handed alpha
Helix 28	AD1	B	198	205	Right-handed alpha
Helix 29	AD2	B	208	212	Right-handed 310
Helix 30	AD3	B	242	251	Right-handed alpha
Helix 31	AD4	B	305	315	Right-handed alpha
Helix 32	AD5	B	320	322	Right-handed 310
Helix 33	AD6	B	323	328	Right-handed alpha
Helix 34	AD7	B	365	388	Right-handed alpha
Helix 35	AD8	B	398	402	Right-handed 310
Helix 36	AD9	B	403	415	Right-handed alpha
Helix 37	AE1	B	425	439	Right-handed alpha
Helix 38	AE2	B	443	451	Right-handed 310
Helix 39	AE3	B	462	483	Right-handed alpha

There are 13 sheets in PDB entry 9LYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	32	first strand
Strand 2	A	13	20	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	72	79	parallel
Strand 5	A	235	241	parallel
Strand 6	A	219	224	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	98	99	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	85	88	anti-parallel
Strand 3	A	158	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	214	216	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	196	197	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	290	first strand
Strand 2	A	293	302	anti-parallel
Strand 3	A	265	272	anti-parallel
Strand 4	A	257	261	anti-parallel
Strand 5	A	393	397	parallel
Strand 6	A	417	421	parallel
Strand 7	A	453	457	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	355	360	anti-parallel
Strand 3	B	355	360	anti-parallel
Strand 4	B	336	338	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	32	first strand
Strand 2	B	13	20	anti-parallel
Strand 3	B	3	9	anti-parallel
Strand 4	B	72	79	parallel
Strand 5	B	236	241	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	98	99	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	88	first strand
Strand 2	B	158	161	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	214	216	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	196	197	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	290	first strand
Strand 2	B	293	302	anti-parallel
Strand 3	B	265	270	anti-parallel
Strand 4	B	257	261	anti-parallel
Strand 5	B	393	397	parallel
Strand 6	B	417	421	parallel
Strand 7	B	453	457	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LYU