Analysis of interatomic Contacts of Structural Units in PDB entry:
9LZ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LZ0 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 9LZ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6GLU 364
H
 VAL 5SER 122
L
 SER 1LYS 108
P
 ALA 1HIS 32
R
 THR 178HIS 502
R
 VAL 505VAL 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9LZ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 109Right-handed alpha
Helix 2
AA2
A
159 163Right-handed 310
Helix 3
AA3
H
90 94Right-handed 310
Helix 4
AA4
L
80 84Right-handed 310
Helix 5
AA5
P
2 32Right-handed alpha
Helix 6
AA6
R
179 212Right-handed alpha
Helix 7
AA7
R
213 216Right-handed 310
Helix 8
AA8
R
217 245Right-handed alpha
Helix 9
AA9
R
278 312Right-handed alpha
Helix 10
AB1
R
316 347Right-handed alpha
Helix 11
AB2
R
360 392Right-handed alpha
Helix 12
AB3
R
400 411Right-handed alpha
Helix 13
AB4
R
421 425Right-handed 310
Helix 14
AB5
R
434 458Right-handed alpha
Helix 15
AB6
R
463 481Right-handed alpha
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There are 12 sheets in PDB entry 9LZ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
19 22anti-parallel
Strand 3
A
40 42anti-parallel
Strand 4
A
112 114anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
170 171parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 61first strand
Strand 2
A
77 87anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
288 290anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
165 168anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
214 221anti-parallel
Strand 4
A
267 274anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
342 351parallel
Strand 3
A
319 328anti-parallel
Strand 4
A
230 242anti-parallel
Strand 5
A
246 258anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
22 28anti-parallel
Strand 3
H
81 85anti-parallel
Strand 4
H
72 76anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
37 42anti-parallel
Strand 5
H
48 55anti-parallel
Strand 6
H
60 63anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
13 15first strand
Strand 2
H
117 121parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
110 113anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 8first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
103 106parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
Strand 6
L
54 55anti-parallel
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