Analysis of interatomic Contacts of Structural Units in PDB entry:
9M00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M00 entry

There are 2 chains in PDB entry 9M00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 36	LYS 434
A	HIS 37	LYS 434

There are 7 helices in PDB entry 9M00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	218	222	Right-handed 310
Helix 2	AA2	B	271	277	Right-handed 310
Helix 3	AA3	B	364	368	Right-handed 310
Helix 4	AA4	A	95	101	Right-handed alpha
Helix 5	AA5	A	218	222	Right-handed 310
Helix 6	AA6	A	271	277	Right-handed 310
Helix 7	AA7	A	364	368	Right-handed 310

There are 16 sheets in PDB entry 9M00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	39	41	anti-parallel
Strand 3	B	179	182	parallel
Strand 4	B	150	152	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	142	145	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	206	215	anti-parallel
Strand 3	B	279	289	anti-parallel
Strand 4	B	235	246	anti-parallel
Strand 5	B	249	251	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	263	268	anti-parallel
Strand 3	B	225	231	anti-parallel
Strand 4	B	299	307	anti-parallel
Strand 5	B	311	318	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	384	first strand
Strand 2	B	321	329	anti-parallel
Strand 3	B	426	430	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	372	first strand
Strand 2	B	341	345	anti-parallel
Strand 3	B	387	395	anti-parallel
Strand 4	B	407	411	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	353	first strand
Strand 2	B	360	362	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	421	422	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	39	41	anti-parallel
Strand 3	A	179	182	parallel
Strand 4	A	150	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	112	first strand
Strand 2	A	70	75	anti-parallel
Strand 3	A	139	145	anti-parallel
Strand 4	A	157	159	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	194	first strand
Strand 2	A	206	215	anti-parallel
Strand 3	A	279	289	anti-parallel
Strand 4	A	235	246	anti-parallel
Strand 5	A	249	251	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	259	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	225	231	anti-parallel
Strand 4	A	299	307	anti-parallel
Strand 5	A	311	318	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	384	first strand
Strand 2	A	321	329	anti-parallel
Strand 3	A	426	430	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	341	345	anti-parallel
Strand 3	A	387	395	anti-parallel
Strand 4	A	407	411	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	353	first strand
Strand 2	A	360	362	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	421	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M00

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M00