Analysis of interatomic Contacts of Structural Units in PDB entry:
9M08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M08 entry

There are 4 chains in PDB entry 9M08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 58LYS 220
B
 GLN 58LYS 220
C
 LEU 26VAL 181
D
 LEU 26VAL 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9M08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 73Right-handed alpha
Helix 2
AA2
A
82 95Right-handed alpha
Helix 3
AA3
A
96 106Right-handed alpha
Helix 4
AA4
A
111 124Right-handed alpha
Helix 5
AA5
A
128 145Right-handed alpha
Helix 6
AA6
A
150 220Right-handed alpha
Helix 7
AA7
B
69 74Right-handed alpha
Helix 8
AA8
B
82 94Right-handed alpha
Helix 9
AA9
B
96 106Right-handed alpha
Helix 10
AB1
B
111 122Right-handed alpha
Helix 11
AB2
B
128 142Right-handed alpha
Helix 12
AB3
B
143 146Right-handed 310
Helix 13
AB4
B
150 220Right-handed alpha
Helix 14
AB5
C
27 79Right-handed alpha
Helix 15
AB6
C
80 100Right-handed alpha
Helix 16
AB7
C
108 121Right-handed alpha
Helix 17
AB8
C
132 179Right-handed alpha
Helix 18
AB9
D
27 78Right-handed alpha
Helix 19
AC1
D
80 100Right-handed alpha
Helix 20
AC2
D
107 121Right-handed alpha
Helix 21
AC3
D
132 179Right-handed alpha
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There are no sheets in PDB entry 9M08
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il