Analysis of interatomic Contacts of Structural Units in PDB entry:
9M0B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M0B entry

There are 2 chains in PDB entry 9M0B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 671	HIS 1443
B	GLY 671	HIS 1442

There are 60 helices in PDB entry 9M0B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	677	679	Right-handed 310
Helix 2	AA2	A	817	821	Right-handed 310
Helix 3	AA3	A	857	863	Right-handed 310
Helix 4	AA4	A	891	902	Right-handed alpha
Helix 5	AA5	A	902	908	Right-handed alpha
Helix 6	AA6	A	919	921	Right-handed 310
Helix 7	AA7	A	922	931	Right-handed alpha
Helix 8	AA8	A	933	937	Right-handed 310
Helix 9	AA9	A	948	952	Right-handed 310
Helix 10	AB1	A	970	984	Right-handed alpha
Helix 11	AB2	A	994	1003	Right-handed 310
Helix 12	AB3	A	1012	1027	Right-handed alpha
Helix 13	AB4	A	1028	1035	Right-handed alpha
Helix 14	AB5	A	1044	1052	Right-handed alpha
Helix 15	AB6	A	1055	1066	Right-handed alpha
Helix 16	AB7	A	1072	1099	Right-handed alpha
Helix 17	AB8	A	1112	1116	Right-handed 310
Helix 18	AB9	A	1142	1155	Right-handed alpha
Helix 19	AC1	A	1163	1173	Right-handed alpha
Helix 20	AC2	A	1175	1177	Right-handed 310
Helix 21	AC3	A	1178	1189	Right-handed alpha
Helix 22	AC4	A	1215	1225	Right-handed alpha
Helix 23	AC5	A	1226	1229	Right-handed 310
Helix 24	AC6	A	1244	1249	Right-handed alpha
Helix 25	AC7	A	1256	1269	Right-handed alpha
Helix 26	AC8	A	1288	1293	Right-handed alpha
Helix 27	AC9	A	1301	1307	Right-handed 310
Helix 28	AD1	A	1308	1317	Right-handed alpha
Helix 29	AD2	A	1318	1320	Right-handed 310
Helix 30	AD3	A	1326	1335	Right-handed 310
Helix 31	AD4	B	677	679	Right-handed 310
Helix 32	AD5	B	817	821	Right-handed 310
Helix 33	AD6	B	857	863	Right-handed 310
Helix 34	AD7	B	891	902	Right-handed alpha
Helix 35	AD8	B	902	908	Right-handed alpha
Helix 36	AD9	B	919	921	Right-handed 310
Helix 37	AE1	B	922	931	Right-handed alpha
Helix 38	AE2	B	933	937	Right-handed 310
Helix 39	AE3	B	948	952	Right-handed 310
Helix 40	AE4	B	970	984	Right-handed alpha
Helix 41	AE5	B	994	1003	Right-handed 310
Helix 42	AE6	B	1012	1027	Right-handed alpha
Helix 43	AE7	B	1028	1035	Right-handed alpha
Helix 44	AE8	B	1044	1052	Right-handed alpha
Helix 45	AE9	B	1055	1066	Right-handed alpha
Helix 46	AF1	B	1072	1099	Right-handed alpha
Helix 47	AF2	B	1112	1116	Right-handed 310
Helix 48	AF3	B	1142	1155	Right-handed alpha
Helix 49	AF4	B	1163	1173	Right-handed alpha
Helix 50	AF5	B	1177	1189	Right-handed alpha
Helix 51	AF6	B	1211	1214	Right-handed 310
Helix 52	AF7	B	1215	1225	Right-handed alpha
Helix 53	AF8	B	1226	1229	Right-handed 310
Helix 54	AF9	B	1244	1249	Right-handed alpha
Helix 55	AG1	B	1256	1269	Right-handed alpha
Helix 56	AG2	B	1288	1293	Right-handed alpha
Helix 57	AG3	B	1301	1307	Right-handed 310
Helix 58	AG4	B	1308	1317	Right-handed alpha
Helix 59	AG5	B	1318	1320	Right-handed 310
Helix 60	AG6	B	1326	1335	Right-handed 310

There are 20 sheets in PDB entry 9M0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	796	806	anti-parallel
Strand 3	A	722	731	anti-parallel
Strand 4	A	764	767	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	796	806	anti-parallel
Strand 3	A	722	731	anti-parallel
Strand 4	A	774	775	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	684	first strand
Strand 2	A	710	719	anti-parallel
Strand 3	A	779	787	anti-parallel
Strand 4	A	738	744	anti-parallel
Strand 5	A	747	754	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	698	first strand
Strand 2	A	703	704	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	855	first strand
Strand 2	A	878	882	parallel
Strand 3	A	912	917	parallel
Strand 4	A	989	992	parallel
Strand 5	A	1103	1106	parallel
Strand 6	A	1124	1129	parallel
Strand 7	A	1157	1162	parallel
Strand 8	A	1192	1193	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	956	first strand
Strand 2	A	959	960	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1199	1200	first strand
Strand 2	A	1207	1208	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1232	1234	first strand
Strand 2	A	1349	1356	anti-parallel
Strand 3	A	1364	1370	anti-parallel
Strand 4	A	1432	1439	anti-parallel
Strand 5	A	1397	1403	anti-parallel
Strand 6	A	1409	1412	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1273	1278	first strand
Strand 2	A	1238	1243	parallel
Strand 3	A	1297	1300	parallel
Strand 4	A	1322	1324	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1343	1344	first strand
Strand 2	A	1337	1340	anti-parallel
Strand 3	A	1384	1388	anti-parallel
Strand 4	A	1422	1426	anti-parallel
Strand 5	A	1414	1415	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	796	806	anti-parallel
Strand 3	B	722	731	anti-parallel
Strand 4	B	764	767	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	796	806	anti-parallel
Strand 3	B	722	731	anti-parallel
Strand 4	B	774	775	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	684	first strand
Strand 2	B	710	719	anti-parallel
Strand 3	B	779	787	anti-parallel
Strand 4	B	738	744	anti-parallel
Strand 5	B	747	754	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	698	first strand
Strand 2	B	703	704	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	854	855	first strand
Strand 2	B	878	882	parallel
Strand 3	B	912	917	parallel
Strand 4	B	989	992	parallel
Strand 5	B	1103	1106	parallel
Strand 6	B	1124	1129	parallel
Strand 7	B	1157	1162	parallel
Strand 8	B	1192	1193	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	955	956	first strand
Strand 2	B	959	960	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1199	1202	first strand
Strand 2	B	1206	1208	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1232	1234	first strand
Strand 2	B	1349	1356	anti-parallel
Strand 3	B	1364	1370	anti-parallel
Strand 4	B	1432	1439	anti-parallel
Strand 5	B	1397	1403	anti-parallel
Strand 6	B	1409	1412	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1273	1278	first strand
Strand 2	B	1238	1243	parallel
Strand 3	B	1297	1300	parallel
Strand 4	B	1322	1324	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1343	1344	first strand
Strand 2	B	1337	1340	anti-parallel
Strand 3	B	1384	1388	anti-parallel
Strand 4	B	1422	1426	anti-parallel
Strand 5	B	1414	1415	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M0B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M0B