Analysis of interatomic Contacts of Structural Units in PDB entry:
9M0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M0Q entry

There are 4 chains in PDB entry 9M0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 401SER 628
A
 THR 630ASN 786
B
 MET 1SER 232
B
 THR 234ASN 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9M0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
437 450Right-handed alpha
Helix 2
AA2
A
459 470Right-handed alpha
Helix 3
AA3
A
472 474Right-handed 310
Helix 4
AA4
A
479 481Right-handed 310
Helix 5
AA5
A
488 501Right-handed alpha
Helix 6
AA6
A
515 524Right-handed alpha
Helix 7
AA7
A
543 553Right-handed alpha
Helix 8
AA8
A
573 587Right-handed alpha
Helix 9
AA9
A
597 601Right-handed 310
Helix 10
AB1
A
609 613Right-handed 310
Helix 11
AB2
A
617 619Right-handed 310
Helix 12
AB3
A
626 631Right-handed alpha
Helix 13
AB4
A
645 660Right-handed alpha
Helix 14
AB5
A
667 679Right-handed alpha
Helix 15
AB6
A
679 702Right-handed alpha
Helix 16
AB7
A
724 727Right-handed 310
Helix 17
AB8
A
729 742Right-handed alpha
Helix 18
AB9
A
749 752Right-handed 310
Helix 19
AC1
A
754 756Right-handed 310
Helix 20
AC2
A
766 784Right-handed alpha
Helix 21
AC3
B
41 52Right-handed alpha
Helix 22
AC4
B
63 78Right-handed alpha
Helix 23
AC5
B
83 85Right-handed 310
Helix 24
AC6
B
92 105Right-handed alpha
Helix 25
AC7
B
119 128Right-handed alpha
Helix 26
AC8
B
147 157Right-handed alpha
Helix 27
AC9
B
179 191Right-handed alpha
Helix 28
AD1
B
201 205Right-handed 310
Helix 29
AD2
B
213 217Right-handed 310
Helix 30
AD3
B
218 223Right-handed alpha
Helix 31
AD4
B
237 241Right-handed 310
Helix 32
AD5
B
249 264Right-handed alpha
Helix 33
AD6
B
271 283Right-handed alpha
Helix 34
AD7
B
283 306Right-handed alpha
Helix 35
AD8
B
328 331Right-handed 310
Helix 36
AD9
B
333 346Right-handed alpha
Helix 37
AE1
B
353 356Right-handed 310
Helix 38
AE2
B
358 360Right-handed 310
Helix 39
AE3
B
370 389Right-handed alpha
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There are 8 sheets in PDB entry 9M0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
743 744parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 486first strand
Strand 2
A
639 642anti-parallel
Strand 3
A
621 625anti-parallel
Strand 4
A
590 594parallel
Strand 5
A
556 562parallel
Strand 6
A
506 509parallel
Strand 7
A
527 530parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 535first strand
Strand 2
A
540 541anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 710first strand
Strand 2
A
718 722anti-parallel
Strand 3
A
758 762anti-parallel
Strand 4
A
746 747anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
347 348parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
243 246anti-parallel
Strand 3
B
225 229anti-parallel
Strand 4
B
194 198parallel
Strand 5
B
160 166parallel
Strand 6
B
110 113parallel
Strand 7
B
131 134parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
144 146anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
362 366anti-parallel
Strand 4
B
350 351anti-parallel
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