Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M1H entry

There are 4 chains in PDB entry 9M1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 34LEU 366
B
 LEU 5VAL 361
C
 GLU 8ASN 345
G
 THR 5ASN 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9M1H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 65Right-handed alpha
Helix 2
AA2
A
66 68Right-handed 310
Helix 3
AA3
A
69 102Right-handed alpha
Helix 4
AA4
A
107 141Right-handed alpha
Helix 5
AA5
A
141 149Right-handed alpha
Helix 6
AA6
A
150 171Right-handed alpha
Helix 7
AA7
A
172 175Right-handed 310
Helix 8
AA8
A
196 224Right-handed alpha
Helix 9
AA9
A
225 239Right-handed alpha
Helix 10
AB1
A
288 321Right-handed alpha
Helix 11
AB2
A
325 342Right-handed alpha
Helix 12
AB3
A
342 352Right-handed alpha
Helix 13
AB4
A
356 366Right-handed alpha
Helix 14
AB5
B
7 32Right-handed alpha
Helix 15
AB6
B
45 52Right-handed alpha
Helix 16
AB7
B
210 216Right-handed 310
Helix 17
AB8
B
229 245Right-handed alpha
Helix 18
AB9
B
260 271Right-handed alpha
Helix 19
AC1
B
274 279Right-handed alpha
Helix 20
AC2
B
280 283Right-handed 310
Helix 21
AC3
B
298 318Right-handed alpha
Helix 22
AC4
B
337 359Right-handed alpha
Helix 23
AC5
C
9 30Right-handed alpha
Helix 24
AC6
C
34 38Right-handed 310
Helix 25
AC7
G
6 22Right-handed alpha
Helix 26
AC8
G
28 43Right-handed alpha
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There are 9 sheets in PDB entry 9M1H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
188 190anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 191first strand
Strand 2
B
194 201anti-parallel
Strand 3
B
33 40parallel
Strand 4
B
220 226parallel
Strand 5
B
254 259parallel
Strand 6
B
326 330parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
341 344anti-parallel
Strand 3
C
332 336anti-parallel
Strand 4
C
320 325anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 68first strand
Strand 2
C
74 79anti-parallel
Strand 3
C
83 88anti-parallel
Strand 4
C
94 99anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 110first strand
Strand 2
C
116 121anti-parallel
Strand 3
C
126 130anti-parallel
Strand 4
C
139 144anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 156first strand
Strand 2
C
161 166anti-parallel
Strand 3
C
171 175anti-parallel
Strand 4
C
180 184anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 197first strand
Strand 2
C
203 208anti-parallel
Strand 3
C
213 217anti-parallel
Strand 4
C
223 227anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 239first strand
Strand 2
C
245 250anti-parallel
Strand 3
C
254 259anti-parallel
Strand 4
C
264 270anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 283first strand
Strand 2
C
289 294anti-parallel
Strand 3
C
299 303anti-parallel
Strand 4
C
309 313anti-parallel
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