Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1I entry

There are 3 chains in PDB entry 9M1I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 19	ARG 1182
G	MET 1	ASP 184
b	MET 1	GLU 431

There are 92 helices in PDB entry 9M1I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	32	41	Right-handed alpha
Helix 2	AA2	D	52	65	Right-handed alpha
Helix 3	AA3	D	66	68	Right-handed 310
Helix 4	AA4	D	70	75	Right-handed 310
Helix 5	AA5	D	79	90	Right-handed alpha
Helix 6	AA6	D	95	113	Right-handed alpha
Helix 7	AA7	D	117	121	Right-handed 310
Helix 8	AA8	D	125	128	Right-handed 310
Helix 9	AA9	D	129	139	Right-handed alpha
Helix 10	AB1	D	143	145	Right-handed 310
Helix 11	AB2	D	146	161	Right-handed alpha
Helix 12	AB3	D	184	196	Right-handed alpha
Helix 13	AB4	D	202	216	Right-handed alpha
Helix 14	AB5	D	224	238	Right-handed alpha
Helix 15	AB6	D	243	263	Right-handed alpha
Helix 16	AB7	D	265	270	Right-handed alpha
Helix 17	AB8	D	272	282	Right-handed alpha
Helix 18	AB9	D	290	309	Right-handed alpha
Helix 19	AC1	D	355	369	Right-handed alpha
Helix 20	AC2	D	375	389	Right-handed alpha
Helix 21	AC3	D	392	406	Right-handed alpha
Helix 22	AC4	D	412	429	Right-handed alpha
Helix 23	AC5	D	433	449	Right-handed alpha
Helix 24	AC6	D	460	478	Right-handed alpha
Helix 25	AC7	D	480	482	Right-handed 310
Helix 26	AC8	D	483	498	Right-handed alpha
Helix 27	AC9	D	503	522	Right-handed alpha
Helix 28	AD1	D	527	534	Right-handed alpha
Helix 29	AD2	D	535	540	Right-handed alpha
Helix 30	AD3	D	541	546	Right-handed alpha
Helix 31	AD4	D	547	555	Right-handed alpha
Helix 32	AD5	D	560	570	Right-handed alpha
Helix 33	AD6	D	576	591	Right-handed alpha
Helix 34	AD7	D	594	601	Right-handed alpha
Helix 35	AD8	D	601	610	Right-handed alpha
Helix 36	AD9	D	614	638	Right-handed alpha
Helix 37	AE1	D	648	657	Right-handed alpha
Helix 38	AE2	D	658	665	Right-handed alpha
Helix 39	AE3	D	672	689	Right-handed alpha
Helix 40	AE4	D	697	713	Right-handed alpha
Helix 41	AE5	D	718	721	Right-handed 310
Helix 42	AE6	D	722	741	Right-handed alpha
Helix 43	AE7	D	749	761	Right-handed alpha
Helix 44	AE8	D	768	781	Right-handed alpha
Helix 45	AE9	D	791	803	Right-handed alpha
Helix 46	AF1	D	811	830	Right-handed alpha
Helix 47	AF2	D	844	854	Right-handed alpha
Helix 48	AF3	D	868	889	Right-handed alpha
Helix 49	AF4	D	890	894	Right-handed 310
Helix 50	AF5	D	895	909	Right-handed alpha
Helix 51	AF6	D	910	912	Right-handed 310
Helix 52	AF7	D	914	930	Right-handed alpha
Helix 53	AF8	D	941	949	Right-handed alpha
Helix 54	AF9	D	950	957	Right-handed 310
Helix 55	AG1	D	961	970	Right-handed alpha
Helix 56	AG2	D	971	975	Right-handed 310
Helix 57	AG3	D	976	979	Right-handed 310
Helix 58	AG4	D	980	991	Right-handed alpha
Helix 59	AG5	D	994	1009	Right-handed alpha
Helix 60	AG6	D	1010	1012	Right-handed 310
Helix 61	AG7	D	1015	1033	Right-handed alpha
Helix 62	AG8	D	1039	1052	Right-handed alpha
Helix 63	AG9	D	1065	1077	Right-handed alpha
Helix 64	AH1	D	1084	1098	Right-handed alpha
Helix 65	AH2	D	1099	1102	Right-handed 310
Helix 66	AH3	D	1103	1116	Right-handed alpha
Helix 67	AH4	D	1117	1119	Right-handed 310
Helix 68	AH5	D	1121	1139	Right-handed alpha
Helix 69	AH6	D	1144	1157	Right-handed alpha
Helix 70	AH7	D	1163	1179	Right-handed alpha
Helix 71	AH8	G	3	14	Right-handed alpha
Helix 72	AH9	G	26	37	Right-handed alpha
Helix 73	AI1	G	98	110	Right-handed alpha
Helix 74	AI2	G	134	143	Right-handed alpha
Helix 75	AI3	G	165	178	Right-handed alpha
Helix 76	AI4	b	11	25	Right-handed alpha
Helix 77	AI5	b	43	50	Right-handed 310
Helix 78	AI6	b	70	77	Right-handed alpha
Helix 79	AI7	b	100	106	Right-handed alpha
Helix 80	AI8	b	108	127	Right-handed alpha
Helix 81	AI9	b	142	159	Right-handed alpha
Helix 82	AJ1	b	180	193	Right-handed alpha
Helix 83	AJ2	b	204	213	Right-handed alpha
Helix 84	AJ3	b	221	237	Right-handed alpha
Helix 85	AJ4	b	249	258	Right-handed alpha
Helix 86	AJ5	b	285	293	Right-handed alpha
Helix 87	AJ6	b	295	299	Right-handed 310
Helix 88	AJ7	b	322	334	Right-handed alpha
Helix 89	AJ8	b	371	373	Right-handed 310
Helix 90	AJ9	b	374	390	Right-handed alpha
Helix 91	AK1	b	395	400	Right-handed alpha
Helix 92	AK2	b	404	425	Right-handed alpha

There are 7 sheets in PDB entry 9M1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	G	152	155	anti-parallel
Strand 3	G	119	125	parallel
Strand 4	G	86	87	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	G	152	155	anti-parallel
Strand 3	G	119	125	parallel
Strand 4	G	90	92	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	457	459	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	861	862	first strand
Strand 2	D	865	866	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	21	first strand
Strand 2	G	63	67	parallel
Strand 3	G	50	54	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	92	first strand
Strand 2	b	63	67	parallel
Strand 3	b	3	9	parallel
Strand 4	b	130	136	parallel
Strand 5	b	163	167	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	369	anti-parallel
Strand 9	b	315	318	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	169	170	first strand
Strand 2	b	202	203	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1I