Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1J entry

There are 4 chains in PDB entry 9M1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 19	VAL 1186
E	LEU 129	TRP 527
G	MET 1	ASP 184
b	MET 1	GLU 431

There are107 helices in PDB entry 9M1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	32	42	Right-handed alpha
Helix 2	AA2	D	43	46	Right-handed 310
Helix 3	AA3	D	50	67	Right-handed alpha
Helix 4	AA4	D	70	78	Right-handed 310
Helix 5	AA5	D	79	90	Right-handed alpha
Helix 6	AA6	D	95	113	Right-handed alpha
Helix 7	AA7	D	117	122	Right-handed 310
Helix 8	AA8	D	125	138	Right-handed alpha
Helix 9	AA9	D	146	162	Right-handed alpha
Helix 10	AB1	D	166	171	Right-handed 310
Helix 11	AB2	D	184	197	Right-handed alpha
Helix 12	AB3	D	202	216	Right-handed alpha
Helix 13	AB4	D	224	239	Right-handed alpha
Helix 14	AB5	D	243	263	Right-handed alpha
Helix 15	AB6	D	265	270	Right-handed alpha
Helix 16	AB7	D	271	273	Right-handed 310
Helix 17	AB8	D	274	282	Right-handed alpha
Helix 18	AB9	D	290	309	Right-handed alpha
Helix 19	AC1	D	357	370	Right-handed alpha
Helix 20	AC2	D	373	388	Right-handed alpha
Helix 21	AC3	D	392	405	Right-handed alpha
Helix 22	AC4	D	412	430	Right-handed alpha
Helix 23	AC5	D	433	435	Right-handed 310
Helix 24	AC6	D	436	448	Right-handed alpha
Helix 25	AC7	D	460	478	Right-handed alpha
Helix 26	AC8	D	483	501	Right-handed alpha
Helix 27	AC9	D	503	522	Right-handed alpha
Helix 28	AD1	D	526	534	Right-handed alpha
Helix 29	AD2	D	537	540	Right-handed 310
Helix 30	AD3	D	541	546	Right-handed alpha
Helix 31	AD4	D	548	555	Right-handed alpha
Helix 32	AD5	D	556	559	Right-handed 310
Helix 33	AD6	D	560	571	Right-handed alpha
Helix 34	AD7	D	576	592	Right-handed alpha
Helix 35	AD8	D	594	601	Right-handed alpha
Helix 36	AD9	D	601	610	Right-handed alpha
Helix 37	AE1	D	614	639	Right-handed alpha
Helix 38	AE2	D	648	656	Right-handed alpha
Helix 39	AE3	D	657	665	Right-handed alpha
Helix 40	AE4	D	672	690	Right-handed alpha
Helix 41	AE5	D	697	713	Right-handed alpha
Helix 42	AE6	D	718	721	Right-handed 310
Helix 43	AE7	D	722	740	Right-handed alpha
Helix 44	AE8	D	749	762	Right-handed alpha
Helix 45	AE9	D	763	766	Right-handed 310
Helix 46	AF1	D	768	780	Right-handed alpha
Helix 47	AF2	D	784	788	Right-handed 310
Helix 48	AF3	D	790	803	Right-handed alpha
Helix 49	AF4	D	811	830	Right-handed alpha
Helix 50	AF5	D	845	855	Right-handed alpha
Helix 51	AF6	D	856	858	Right-handed 310
Helix 52	AF7	D	867	889	Right-handed alpha
Helix 53	AF8	D	890	894	Right-handed 310
Helix 54	AF9	D	895	911	Right-handed alpha
Helix 55	AG1	D	914	930	Right-handed alpha
Helix 56	AG2	D	941	949	Right-handed alpha
Helix 57	AG3	D	961	964	Right-handed 310
Helix 58	AG4	D	965	970	Right-handed alpha
Helix 59	AG5	D	971	975	Right-handed 310
Helix 60	AG6	D	980	991	Right-handed alpha
Helix 61	AG7	D	994	1010	Right-handed alpha
Helix 62	AG8	D	1015	1033	Right-handed alpha
Helix 63	AG9	D	1039	1052	Right-handed alpha
Helix 64	AH1	D	1065	1079	Right-handed alpha
Helix 65	AH2	D	1084	1098	Right-handed alpha
Helix 66	AH3	D	1099	1101	Right-handed 310
Helix 67	AH4	D	1103	1118	Right-handed alpha
Helix 68	AH5	D	1121	1139	Right-handed alpha
Helix 69	AH6	D	1144	1157	Right-handed alpha
Helix 70	AH7	D	1163	1178	Right-handed alpha
Helix 71	AH8	E	146	152	Right-handed alpha
Helix 72	AH9	E	167	178	Right-handed alpha
Helix 73	AI1	E	217	225	Right-handed alpha
Helix 74	AI2	E	226	228	Right-handed 310
Helix 75	AI3	E	268	273	Right-handed alpha
Helix 76	AI4	E	274	276	Right-handed 310
Helix 77	AI5	E	322	329	Right-handed alpha
Helix 78	AI6	E	350	362	Right-handed alpha
Helix 79	AI7	E	374	396	Right-handed alpha
Helix 80	AI8	E	408	415	Right-handed alpha
Helix 81	AI9	E	417	425	Right-handed alpha
Helix 82	AJ1	E	470	483	Right-handed alpha
Helix 83	AJ2	E	485	489	Right-handed 310
Helix 84	AJ3	G	2	15	Right-handed alpha
Helix 85	AJ4	G	28	35	Right-handed alpha
Helix 86	AJ5	G	73	78	Right-handed alpha
Helix 87	AJ6	G	98	110	Right-handed alpha
Helix 88	AJ7	G	134	143	Right-handed alpha
Helix 89	AJ8	G	165	178	Right-handed alpha
Helix 90	AJ9	b	10	29	Right-handed alpha
Helix 91	AK1	b	40	44	Right-handed 310
Helix 92	AK2	b	69	78	Right-handed alpha
Helix 93	AK3	b	86	88	Right-handed 310
Helix 94	AK4	b	100	106	Right-handed alpha
Helix 95	AK5	b	112	126	Right-handed alpha
Helix 96	AK6	b	142	159	Right-handed alpha
Helix 97	AK7	b	180	193	Right-handed alpha
Helix 98	AK8	b	204	212	Right-handed alpha
Helix 99	AK9	b	221	237	Right-handed alpha
Helix 100	AL1	b	249	258	Right-handed alpha
Helix 101	AL2	b	285	294	Right-handed alpha
Helix 102	AL3	b	295	299	Right-handed 310
Helix 103	AL4	b	304	308	Right-handed 310
Helix 104	AL5	b	322	334	Right-handed alpha
Helix 105	AL6	b	373	390	Right-handed alpha
Helix 106	AL7	b	395	400	Right-handed alpha
Helix 107	AL8	b	404	427	Right-handed alpha

There are 9 sheets in PDB entry 9M1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	G	153	156	anti-parallel
Strand 3	G	119	125	parallel
Strand 4	G	86	92	parallel
Strand 5	G	19	23	parallel
Strand 6	G	60	67	parallel
Strand 7	G	50	57	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	457	459	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	133	first strand
Strand 2	E	157	159	parallel
Strand 3	E	183	185	parallel
Strand 4	E	208	210	parallel
Strand 5	E	233	235	parallel
Strand 6	E	256	258	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	283	first strand
Strand 2	E	311	314	parallel
Strand 3	E	338	339	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	462	466	first strand
Strand 2	E	445	451	anti-parallel
Strand 3	E	522	526	parallel
Strand 4	E	490	494	anti-parallel
Strand 5	E	503	505	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	91	first strand
Strand 2	b	63	66	parallel
Strand 3	b	2	9	parallel
Strand 4	b	129	136	parallel
Strand 5	b	164	167	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	371	anti-parallel
Strand 9	b	310	318	anti-parallel
Strand 10	b	349	350	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	91	first strand
Strand 2	b	63	66	parallel
Strand 3	b	2	9	parallel
Strand 4	b	129	136	parallel
Strand 5	b	164	167	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	371	anti-parallel
Strand 9	b	310	318	anti-parallel
Strand 10	b	353	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	51	53	first strand
Strand 2	b	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	169	170	first strand
Strand 2	b	202	203	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1J