Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1K entry

There are 4 chains in PDB entry 9M1K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LEU 439	TRP 527
D	GLU 28	PRO 1183
G	MET 1	ASP 184
b	MET 1	GLU 431

There are 99 helices in PDB entry 9M1K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	470	483	Right-handed alpha
Helix 2	AA2	D	32	42	Right-handed alpha
Helix 3	AA3	D	50	66	Right-handed alpha
Helix 4	AA4	D	70	76	Right-handed 310
Helix 5	AA5	D	77	87	Right-handed alpha
Helix 6	AA6	D	95	113	Right-handed alpha
Helix 7	AA7	D	114	119	Right-handed alpha
Helix 8	AA8	D	129	134	Right-handed alpha
Helix 9	AA9	D	135	139	Right-handed 310
Helix 10	AB1	D	148	161	Right-handed alpha
Helix 11	AB2	D	184	197	Right-handed alpha
Helix 12	AB3	D	202	216	Right-handed alpha
Helix 13	AB4	D	217	222	Right-handed alpha
Helix 14	AB5	D	225	237	Right-handed alpha
Helix 15	AB6	D	243	263	Right-handed alpha
Helix 16	AB7	D	269	282	Right-handed alpha
Helix 17	AB8	D	290	309	Right-handed alpha
Helix 18	AB9	D	357	369	Right-handed alpha
Helix 19	AC1	D	373	389	Right-handed alpha
Helix 20	AC2	D	392	406	Right-handed alpha
Helix 21	AC3	D	412	430	Right-handed alpha
Helix 22	AC4	D	433	435	Right-handed 310
Helix 23	AC5	D	436	446	Right-handed alpha
Helix 24	AC6	D	460	478	Right-handed alpha
Helix 25	AC7	D	479	484	Right-handed alpha
Helix 26	AC8	D	487	498	Right-handed alpha
Helix 27	AC9	D	503	521	Right-handed alpha
Helix 28	AD1	D	526	534	Right-handed alpha
Helix 29	AD2	D	541	546	Right-handed alpha
Helix 30	AD3	D	547	555	Right-handed alpha
Helix 31	AD4	D	556	559	Right-handed 310
Helix 32	AD5	D	560	570	Right-handed alpha
Helix 33	AD6	D	571	574	Right-handed 310
Helix 34	AD7	D	576	592	Right-handed alpha
Helix 35	AD8	D	596	601	Right-handed alpha
Helix 36	AD9	D	602	609	Right-handed alpha
Helix 37	AE1	D	610	612	Right-handed 310
Helix 38	AE2	D	614	639	Right-handed alpha
Helix 39	AE3	D	642	646	Right-handed 310
Helix 40	AE4	D	648	656	Right-handed alpha
Helix 41	AE5	D	657	665	Right-handed alpha
Helix 42	AE6	D	669	690	Right-handed alpha
Helix 43	AE7	D	697	713	Right-handed alpha
Helix 44	AE8	D	721	740	Right-handed alpha
Helix 45	AE9	D	749	763	Right-handed alpha
Helix 46	AF1	D	764	766	Right-handed 310
Helix 47	AF2	D	768	781	Right-handed alpha
Helix 48	AF3	D	790	802	Right-handed alpha
Helix 49	AF4	D	811	830	Right-handed alpha
Helix 50	AF5	D	844	857	Right-handed alpha
Helix 51	AF6	D	867	887	Right-handed alpha
Helix 52	AF7	D	888	889	Right-handed 310
Helix 53	AF8	D	890	894	Right-handed 310
Helix 54	AF9	D	895	911	Right-handed alpha
Helix 55	AG1	D	914	930	Right-handed alpha
Helix 56	AG2	D	941	949	Right-handed alpha
Helix 57	AG3	D	961	964	Right-handed 310
Helix 58	AG4	D	965	970	Right-handed alpha
Helix 59	AG5	D	971	975	Right-handed 310
Helix 60	AG6	D	976	978	Right-handed 310
Helix 61	AG7	D	979	991	Right-handed alpha
Helix 62	AG8	D	994	1011	Right-handed alpha
Helix 63	AG9	D	1015	1032	Right-handed alpha
Helix 64	AH1	D	1036	1054	Right-handed alpha
Helix 65	AH2	D	1057	1061	Right-handed 310
Helix 66	AH3	D	1065	1080	Right-handed alpha
Helix 67	AH4	D	1084	1098	Right-handed alpha
Helix 68	AH5	D	1099	1102	Right-handed 310
Helix 69	AH6	D	1103	1117	Right-handed alpha
Helix 70	AH7	D	1121	1139	Right-handed alpha
Helix 71	AH8	D	1144	1157	Right-handed alpha
Helix 72	AH9	D	1163	1179	Right-handed alpha
Helix 73	AI1	G	2	15	Right-handed alpha
Helix 74	AI2	G	28	38	Right-handed alpha
Helix 75	AI3	G	70	75	Right-handed alpha
Helix 76	AI4	G	76	81	Right-handed 310
Helix 77	AI5	G	98	112	Right-handed alpha
Helix 78	AI6	G	134	142	Right-handed alpha
Helix 79	AI7	G	164	180	Right-handed alpha
Helix 80	AI8	b	10	26	Right-handed alpha
Helix 81	AI9	b	46	49	Right-handed 310
Helix 82	AJ1	b	69	78	Right-handed alpha
Helix 83	AJ2	b	86	88	Right-handed 310
Helix 84	AJ3	b	100	106	Right-handed alpha
Helix 85	AJ4	b	108	127	Right-handed alpha
Helix 86	AJ5	b	142	159	Right-handed alpha
Helix 87	AJ6	b	180	185	Right-handed alpha
Helix 88	AJ7	b	186	195	Right-handed alpha
Helix 89	AJ8	b	204	214	Right-handed alpha
Helix 90	AJ9	b	221	237	Right-handed alpha
Helix 91	AK1	b	237	242	Right-handed alpha
Helix 92	AK2	b	249	258	Right-handed alpha
Helix 93	AK3	b	285	294	Right-handed alpha
Helix 94	AK4	b	295	299	Right-handed 310
Helix 95	AK5	b	322	334	Right-handed alpha
Helix 96	AK6	b	371	373	Right-handed 310
Helix 97	AK7	b	374	390	Right-handed alpha
Helix 98	AK8	b	394	400	Right-handed alpha
Helix 99	AK9	b	404	427	Right-handed alpha

There are 6 sheets in PDB entry 9M1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	465	first strand
Strand 2	E	446	451	anti-parallel
Strand 3	E	522	526	parallel
Strand 4	E	490	494	anti-parallel
Strand 5	E	503	504	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	458	459	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	57	first strand
Strand 2	G	60	67	anti-parallel
Strand 3	G	16	22	parallel
Strand 4	G	86	92	parallel
Strand 5	G	119	125	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	91	first strand
Strand 2	b	63	66	parallel
Strand 3	b	2	9	parallel
Strand 4	b	129	136	parallel
Strand 5	b	163	166	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	268	parallel
Strand 8	b	363	369	anti-parallel
Strand 9	b	313	319	anti-parallel
Strand 10	b	352	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	51	53	first strand
Strand 2	b	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	169	170	first strand
Strand 2	b	202	203	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1K