Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1L entry

There are 5 chains in PDB entry 9M1L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 28	LEU 1185
G	MET 1	ASP 184
E	ALA 7	TRP 527
a	MET 1	ASP 438
b	MET 1	GLU 431

There are123 helices in PDB entry 9M1L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	32	42	Right-handed alpha
Helix 2	AA2	D	49	65	Right-handed alpha
Helix 3	AA3	D	66	68	Right-handed 310
Helix 4	AA4	D	70	78	Right-handed 310
Helix 5	AA5	D	79	91	Right-handed alpha
Helix 6	AA6	D	95	113	Right-handed alpha
Helix 7	AA7	D	114	119	Right-handed alpha
Helix 8	AA8	D	125	127	Right-handed 310
Helix 9	AA9	D	128	138	Right-handed alpha
Helix 10	AB1	D	146	161	Right-handed alpha
Helix 11	AB2	D	166	171	Right-handed alpha
Helix 12	AB3	D	184	197	Right-handed alpha
Helix 13	AB4	D	202	215	Right-handed alpha
Helix 14	AB5	D	224	239	Right-handed alpha
Helix 15	AB6	D	243	263	Right-handed alpha
Helix 16	AB7	D	272	282	Right-handed alpha
Helix 17	AB8	D	290	309	Right-handed alpha
Helix 18	AB9	D	355	367	Right-handed alpha
Helix 19	AC1	D	368	371	Right-handed 310
Helix 20	AC2	D	373	389	Right-handed alpha
Helix 21	AC3	D	392	405	Right-handed alpha
Helix 22	AC4	D	406	408	Right-handed 310
Helix 23	AC5	D	412	430	Right-handed alpha
Helix 24	AC6	D	433	435	Right-handed 310
Helix 25	AC7	D	436	448	Right-handed alpha
Helix 26	AC8	D	460	475	Right-handed alpha
Helix 27	AC9	D	479	498	Right-handed alpha
Helix 28	AD1	D	503	521	Right-handed alpha
Helix 29	AD2	D	526	534	Right-handed alpha
Helix 30	AD3	D	541	546	Right-handed alpha
Helix 31	AD4	D	548	555	Right-handed alpha
Helix 32	AD5	D	560	570	Right-handed alpha
Helix 33	AD6	D	571	574	Right-handed 310
Helix 34	AD7	D	577	594	Right-handed alpha
Helix 35	AD8	D	594	601	Right-handed alpha
Helix 36	AD9	D	601	610	Right-handed alpha
Helix 37	AE1	D	614	639	Right-handed alpha
Helix 38	AE2	D	642	646	Right-handed 310
Helix 39	AE3	D	648	666	Right-handed alpha
Helix 40	AE4	D	671	689	Right-handed alpha
Helix 41	AE5	D	697	713	Right-handed alpha
Helix 42	AE6	D	718	720	Right-handed 310
Helix 43	AE7	D	721	738	Right-handed alpha
Helix 44	AE8	D	749	762	Right-handed alpha
Helix 45	AE9	D	768	781	Right-handed alpha
Helix 46	AF1	D	790	803	Right-handed alpha
Helix 47	AF2	D	811	830	Right-handed alpha
Helix 48	AF3	D	844	856	Right-handed alpha
Helix 49	AF4	D	867	888	Right-handed alpha
Helix 50	AF5	D	889	894	Right-handed 310
Helix 51	AF6	D	895	910	Right-handed alpha
Helix 52	AF7	D	915	931	Right-handed alpha
Helix 53	AF8	D	941	949	Right-handed alpha
Helix 54	AF9	D	950	954	Right-handed 310
Helix 55	AG1	D	961	964	Right-handed 310
Helix 56	AG2	D	965	970	Right-handed alpha
Helix 57	AG3	D	971	975	Right-handed 310
Helix 58	AG4	D	979	990	Right-handed alpha
Helix 59	AG5	D	995	1010	Right-handed alpha
Helix 60	AG6	D	1011	1013	Right-handed 310
Helix 61	AG7	D	1015	1033	Right-handed alpha
Helix 62	AG8	D	1039	1054	Right-handed alpha
Helix 63	AG9	D	1058	1062	Right-handed 310
Helix 64	AH1	D	1065	1079	Right-handed alpha
Helix 65	AH2	D	1084	1098	Right-handed alpha
Helix 66	AH3	D	1103	1118	Right-handed alpha
Helix 67	AH4	D	1121	1139	Right-handed alpha
Helix 68	AH5	D	1144	1155	Right-handed alpha
Helix 69	AH6	D	1163	1179	Right-handed alpha
Helix 70	AH7	G	2	15	Right-handed alpha
Helix 71	AH8	G	29	38	Right-handed alpha
Helix 72	AH9	G	70	75	Right-handed alpha
Helix 73	AI1	G	76	80	Right-handed 310
Helix 74	AI2	G	102	107	Right-handed alpha
Helix 75	AI3	G	134	142	Right-handed alpha
Helix 76	AI4	G	164	178	Right-handed alpha
Helix 77	AI5	E	71	75	Right-handed 310
Helix 78	AI6	E	80	90	Right-handed alpha
Helix 79	AI7	E	115	125	Right-handed alpha
Helix 80	AI8	E	126	129	Right-handed 310
Helix 81	AI9	E	146	152	Right-handed alpha
Helix 82	AJ1	E	167	178	Right-handed alpha
Helix 83	AJ2	E	217	225	Right-handed alpha
Helix 84	AJ3	E	266	273	Right-handed alpha
Helix 85	AJ4	E	322	329	Right-handed alpha
Helix 86	AJ5	E	351	362	Right-handed alpha
Helix 87	AJ6	E	374	389	Right-handed alpha
Helix 88	AJ7	E	389	396	Right-handed alpha
Helix 89	AJ8	E	408	415	Right-handed alpha
Helix 90	AJ9	E	417	425	Right-handed alpha
Helix 91	AK1	E	440	444	Right-handed alpha
Helix 92	AK2	E	470	483	Right-handed alpha
Helix 93	AK3	a	10	29	Right-handed alpha
Helix 94	AK4	a	48	51	Right-handed 310
Helix 95	AK5	a	71	80	Right-handed alpha
Helix 96	AK6	a	102	108	Right-handed alpha
Helix 97	AK7	a	111	129	Right-handed alpha
Helix 98	AK8	a	143	161	Right-handed alpha
Helix 99	AK9	a	182	194	Right-handed alpha
Helix 100	AL1	a	205	216	Right-handed alpha
Helix 101	AL2	a	223	244	Right-handed alpha
Helix 102	AL3	a	251	259	Right-handed alpha
Helix 103	AL4	a	287	295	Right-handed alpha
Helix 104	AL5	a	306	310	Right-handed 310
Helix 105	AL6	a	324	338	Right-handed alpha
Helix 106	AL7	a	384	401	Right-handed alpha
Helix 107	AL8	a	405	410	Right-handed alpha
Helix 108	AL9	a	414	436	Right-handed alpha
Helix 109	AM1	b	10	29	Right-handed alpha
Helix 110	AM2	b	40	44	Right-handed 310
Helix 111	AM3	b	46	49	Right-handed 310
Helix 112	AM4	b	71	78	Right-handed alpha
Helix 113	AM5	b	112	126	Right-handed alpha
Helix 114	AM6	b	144	159	Right-handed alpha
Helix 115	AM7	b	180	195	Right-handed alpha
Helix 116	AM8	b	203	214	Right-handed alpha
Helix 117	AM9	b	221	237	Right-handed alpha
Helix 118	AN1	b	249	258	Right-handed alpha
Helix 119	AN2	b	285	294	Right-handed alpha
Helix 120	AN3	b	322	331	Right-handed alpha
Helix 121	AN4	b	374	391	Right-handed alpha
Helix 122	AN5	b	395	402	Right-handed alpha
Helix 123	AN6	b	404	427	Right-handed alpha

There are 12 sheets in PDB entry 9M1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	458	459	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	57	first strand
Strand 2	G	60	67	anti-parallel
Strand 3	G	16	23	parallel
Strand 4	G	86	92	parallel
Strand 5	G	119	125	parallel
Strand 6	G	155	156	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	19	28	anti-parallel
Strand 3	E	35	41	anti-parallel
Strand 4	E	68	70	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	106	first strand
Strand 2	E	109	113	anti-parallel
Strand 3	a	351	356	parallel
Strand 4	a	312	321	parallel
Strand 5	a	373	381	anti-parallel
Strand 6	a	269	273	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	133	first strand
Strand 2	E	157	159	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	185	first strand
Strand 2	E	208	210	parallel
Strand 3	E	233	235	parallel
Strand 4	E	256	258	parallel
Strand 5	E	281	283	parallel
Strand 6	E	311	313	parallel
Strand 7	E	336	338	parallel
Strand 8	E	367	368	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	463	466	first strand
Strand 2	E	445	451	anti-parallel
Strand 3	E	522	524	parallel
Strand 4	E	492	494	anti-parallel
Strand 5	E	503	504	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	65	68	first strand
Strand 2	a	3	9	parallel
Strand 3	a	132	138	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	53	54	first strand
Strand 2	a	62	63	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	92	first strand
Strand 2	b	63	67	parallel
Strand 3	b	3	9	parallel
Strand 4	b	130	136	parallel
Strand 5	b	163	166	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	371	anti-parallel
Strand 9	b	310	312	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	92	first strand
Strand 2	b	63	67	parallel
Strand 3	b	3	9	parallel
Strand 4	b	130	136	parallel
Strand 5	b	163	166	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	371	anti-parallel
Strand 9	b	314	318	anti-parallel
Strand 10	b	350	354	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	51	53	first strand
Strand 2	b	59	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1L