Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1M entry

There are 6 chains in PDB entry 9M1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 183	ASP 346
D	LEU 27	VAL 1186
E	MET 1	TRP 527
G	MET 1	ASP 184
a	MET 1	VAL 437
b	MET 1	GLU 431

There are137 helices in PDB entry 9M1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	299	307	Right-handed alpha
Helix 2	AA2	D	32	42	Right-handed alpha
Helix 3	AA3	D	43	46	Right-handed 310
Helix 4	AA4	D	50	65	Right-handed alpha
Helix 5	AA5	D	66	68	Right-handed 310
Helix 6	AA6	D	70	75	Right-handed 310
Helix 7	AA7	D	77	90	Right-handed alpha
Helix 8	AA8	D	95	113	Right-handed alpha
Helix 9	AA9	D	114	119	Right-handed alpha
Helix 10	AB1	D	120	122	Right-handed 310
Helix 11	AB2	D	125	128	Right-handed 310
Helix 12	AB3	D	129	136	Right-handed alpha
Helix 13	AB4	D	137	139	Right-handed 310
Helix 14	AB5	D	146	160	Right-handed alpha
Helix 15	AB6	D	166	172	Right-handed alpha
Helix 16	AB7	D	184	197	Right-handed alpha
Helix 17	AB8	D	202	212	Right-handed alpha
Helix 18	AB9	D	217	224	Right-handed alpha
Helix 19	AC1	D	224	239	Right-handed alpha
Helix 20	AC2	D	243	263	Right-handed alpha
Helix 21	AC3	D	265	270	Right-handed alpha
Helix 22	AC4	D	272	284	Right-handed alpha
Helix 23	AC5	D	290	306	Right-handed alpha
Helix 24	AC6	D	356	366	Right-handed alpha
Helix 25	AC7	D	373	389	Right-handed alpha
Helix 26	AC8	D	392	405	Right-handed alpha
Helix 27	AC9	D	406	408	Right-handed 310
Helix 28	AD1	D	412	430	Right-handed alpha
Helix 29	AD2	D	433	435	Right-handed 310
Helix 30	AD3	D	436	448	Right-handed alpha
Helix 31	AD4	D	460	473	Right-handed alpha
Helix 32	AD5	D	483	487	Right-handed 310
Helix 33	AD6	D	489	501	Right-handed alpha
Helix 34	AD7	D	503	521	Right-handed alpha
Helix 35	AD8	D	526	534	Right-handed alpha
Helix 36	AD9	D	541	548	Right-handed alpha
Helix 37	AE1	D	548	555	Right-handed alpha
Helix 38	AE2	D	560	570	Right-handed alpha
Helix 39	AE3	D	576	591	Right-handed alpha
Helix 40	AE4	D	594	601	Right-handed alpha
Helix 41	AE5	D	601	610	Right-handed alpha
Helix 42	AE6	D	614	640	Right-handed alpha
Helix 43	AE7	D	642	646	Right-handed 310
Helix 44	AE8	D	648	655	Right-handed alpha
Helix 45	AE9	D	657	664	Right-handed alpha
Helix 46	AF1	D	671	689	Right-handed alpha
Helix 47	AF2	D	697	713	Right-handed alpha
Helix 48	AF3	D	714	717	Right-handed 310
Helix 49	AF4	D	721	741	Right-handed alpha
Helix 50	AF5	D	749	764	Right-handed alpha
Helix 51	AF6	D	768	780	Right-handed alpha
Helix 52	AF7	D	784	788	Right-handed 310
Helix 53	AF8	D	790	803	Right-handed alpha
Helix 54	AF9	D	812	830	Right-handed alpha
Helix 55	AG1	D	845	854	Right-handed alpha
Helix 56	AG2	D	867	888	Right-handed alpha
Helix 57	AG3	D	889	894	Right-handed 310
Helix 58	AG4	D	895	910	Right-handed alpha
Helix 59	AG5	D	914	930	Right-handed alpha
Helix 60	AG6	D	941	949	Right-handed alpha
Helix 61	AG7	D	950	955	Right-handed alpha
Helix 62	AG8	D	961	964	Right-handed 310
Helix 63	AG9	D	965	970	Right-handed alpha
Helix 64	AH1	D	971	974	Right-handed 310
Helix 65	AH2	D	975	991	Right-handed alpha
Helix 66	AH3	D	994	1010	Right-handed alpha
Helix 67	AH4	D	1015	1033	Right-handed alpha
Helix 68	AH5	D	1036	1054	Right-handed alpha
Helix 69	AH6	D	1065	1080	Right-handed alpha
Helix 70	AH7	D	1084	1098	Right-handed alpha
Helix 71	AH8	D	1099	1101	Right-handed 310
Helix 72	AH9	D	1103	1118	Right-handed alpha
Helix 73	AI1	D	1121	1139	Right-handed alpha
Helix 74	AI2	D	1144	1148	Right-handed 310
Helix 75	AI3	D	1150	1158	Right-handed alpha
Helix 76	AI4	D	1163	1179	Right-handed alpha
Helix 77	AI5	E	43	47	Right-handed 310
Helix 78	AI6	E	80	89	Right-handed alpha
Helix 79	AI7	E	115	124	Right-handed alpha
Helix 80	AI8	E	125	129	Right-handed 310
Helix 81	AI9	E	146	152	Right-handed alpha
Helix 82	AJ1	E	168	178	Right-handed alpha
Helix 83	AJ2	E	217	225	Right-handed alpha
Helix 84	AJ3	E	226	228	Right-handed 310
Helix 85	AJ4	E	266	271	Right-handed alpha
Helix 86	AJ5	E	272	274	Right-handed 310
Helix 87	AJ6	E	322	329	Right-handed alpha
Helix 88	AJ7	E	348	350	Right-handed 310
Helix 89	AJ8	E	351	362	Right-handed alpha
Helix 90	AJ9	E	374	396	Right-handed alpha
Helix 91	AK1	E	408	415	Right-handed alpha
Helix 92	AK2	E	418	425	Right-handed alpha
Helix 93	AK3	E	429	433	Right-handed 310
Helix 94	AK4	E	440	443	Right-handed 310
Helix 95	AK5	E	470	483	Right-handed alpha
Helix 96	AK6	E	485	489	Right-handed 310
Helix 97	AK7	G	2	15	Right-handed alpha
Helix 98	AK8	G	28	38	Right-handed alpha
Helix 99	AK9	G	76	81	Right-handed 310
Helix 100	AL1	G	98	111	Right-handed alpha
Helix 101	AL2	G	134	142	Right-handed alpha
Helix 102	AL3	G	164	178	Right-handed alpha
Helix 103	AL4	a	10	29	Right-handed alpha
Helix 104	AL5	a	48	51	Right-handed 310
Helix 105	AL6	a	71	80	Right-handed alpha
Helix 106	AL7	a	88	90	Right-handed 310
Helix 107	AL8	a	102	108	Right-handed alpha
Helix 108	AL9	a	110	129	Right-handed alpha
Helix 109	AM1	a	147	161	Right-handed alpha
Helix 110	AM2	a	182	194	Right-handed alpha
Helix 111	AM3	a	205	216	Right-handed alpha
Helix 112	AM4	a	223	244	Right-handed alpha
Helix 113	AM5	a	252	259	Right-handed alpha
Helix 114	AM6	a	297	301	Right-handed 310
Helix 115	AM7	a	324	339	Right-handed alpha
Helix 116	AM8	a	383	400	Right-handed alpha
Helix 117	AM9	a	405	410	Right-handed alpha
Helix 118	AN1	a	415	437	Right-handed alpha
Helix 119	AN2	b	10	29	Right-handed alpha
Helix 120	AN3	b	42	49	Right-handed 310
Helix 121	AN4	b	55	57	Right-handed 310
Helix 122	AN5	b	70	78	Right-handed alpha
Helix 123	AN6	b	86	88	Right-handed 310
Helix 124	AN7	b	100	106	Right-handed alpha
Helix 125	AN8	b	107	125	Right-handed alpha
Helix 126	AN9	b	141	159	Right-handed alpha
Helix 127	AO1	b	180	195	Right-handed alpha
Helix 128	AO2	b	205	214	Right-handed alpha
Helix 129	AO3	b	222	237	Right-handed alpha
Helix 130	AO4	b	237	242	Right-handed alpha
Helix 131	AO5	b	249	258	Right-handed alpha
Helix 132	AO6	b	285	294	Right-handed alpha
Helix 133	AO7	b	295	299	Right-handed 310
Helix 134	AO8	b	322	334	Right-handed alpha
Helix 135	AO9	b	373	387	Right-handed alpha
Helix 136	AP1	b	395	400	Right-handed alpha
Helix 137	AP2	b	404	426	Right-handed alpha

There are 15 sheets in PDB entry 9M1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	187	first strand
Strand 2	C	205	212	parallel
Strand 3	C	224	231	parallel
Strand 4	C	243	247	parallel
Strand 5	C	260	264	parallel
Strand 6	C	278	282	parallel
Strand 7	C	318	320	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	234	236	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	254	first strand
Strand 2	C	267	271	parallel
Strand 3	C	285	289	parallel
Strand 4	C	333	335	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	457	459	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	16	first strand
Strand 2	E	19	28	anti-parallel
Strand 3	E	35	41	anti-parallel
Strand 4	E	67	70	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	56	57	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	106	first strand
Strand 2	E	109	113	anti-parallel
Strand 3	a	351	356	parallel
Strand 4	a	315	321	parallel
Strand 5	a	373	379	anti-parallel
Strand 6	a	269	273	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	159	first strand
Strand 2	E	183	185	parallel
Strand 3	E	208	210	parallel
Strand 4	E	233	235	parallel
Strand 5	E	256	258	parallel
Strand 6	E	281	283	parallel
Strand 7	E	311	313	parallel
Strand 8	E	336	338	parallel
Strand 9	E	367	368	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	466	first strand
Strand 2	E	445	451	anti-parallel
Strand 3	E	522	526	parallel
Strand 4	E	490	495	anti-parallel
Strand 5	E	498	504	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	57	first strand
Strand 2	G	60	67	anti-parallel
Strand 3	G	16	23	parallel
Strand 4	G	86	92	parallel
Strand 5	G	119	125	parallel
Strand 6	G	154	156	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	92	93	first strand
Strand 2	a	65	68	parallel
Strand 3	a	3	9	parallel
Strand 4	a	132	138	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	53	55	first strand
Strand 2	a	61	63	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	91	first strand
Strand 2	b	65	66	parallel
Strand 3	b	2	9	parallel
Strand 4	b	129	136	parallel
Strand 5	b	163	166	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	369	anti-parallel
Strand 9	b	313	318	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	51	53	first strand
Strand 2	b	59	61	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	169	170	first strand
Strand 2	b	202	203	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1M