Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1N entry

There are 5 chains in PDB entry 9M1N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 21	ASP 346
D	LEU 27	VAL 1186
G	MET 1	ASP 184
a	MET 1	VAL 437
b	MET 1	ALA 430

There are124 helices in PDB entry 9M1N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	21	25	Right-handed 310
Helix 2	AA2	C	26	51	Right-handed alpha
Helix 3	AA3	C	52	56	Right-handed 310
Helix 4	AA4	C	57	77	Right-handed alpha
Helix 5	AA5	C	80	100	Right-handed alpha
Helix 6	AA6	C	106	132	Right-handed alpha
Helix 7	AA7	C	197	201	Right-handed 310
Helix 8	AA8	C	298	304	Right-handed alpha
Helix 9	AA9	C	305	307	Right-handed 310
Helix 10	AB1	C	337	341	Right-handed 310
Helix 11	AB2	D	32	41	Right-handed alpha
Helix 12	AB3	D	53	66	Right-handed alpha
Helix 13	AB4	D	70	75	Right-handed 310
Helix 14	AB5	D	79	90	Right-handed alpha
Helix 15	AB6	D	95	113	Right-handed alpha
Helix 16	AB7	D	114	119	Right-handed alpha
Helix 17	AB8	D	120	122	Right-handed 310
Helix 18	AB9	D	129	138	Right-handed alpha
Helix 19	AC1	D	143	145	Right-handed 310
Helix 20	AC2	D	146	160	Right-handed alpha
Helix 21	AC3	D	166	172	Right-handed alpha
Helix 22	AC4	D	184	197	Right-handed alpha
Helix 23	AC5	D	202	215	Right-handed alpha
Helix 24	AC6	D	217	225	Right-handed alpha
Helix 25	AC7	D	225	238	Right-handed alpha
Helix 26	AC8	D	243	264	Right-handed alpha
Helix 27	AC9	D	265	283	Right-handed alpha
Helix 28	AD1	D	284	288	Right-handed 310
Helix 29	AD2	D	290	307	Right-handed alpha
Helix 30	AD3	D	356	370	Right-handed alpha
Helix 31	AD4	D	373	389	Right-handed alpha
Helix 32	AD5	D	394	405	Right-handed alpha
Helix 33	AD6	D	406	408	Right-handed 310
Helix 34	AD7	D	412	429	Right-handed alpha
Helix 35	AD8	D	433	435	Right-handed 310
Helix 36	AD9	D	436	448	Right-handed alpha
Helix 37	AE1	D	460	478	Right-handed alpha
Helix 38	AE2	D	483	485	Right-handed 310
Helix 39	AE3	D	486	501	Right-handed alpha
Helix 40	AE4	D	503	521	Right-handed alpha
Helix 41	AE5	D	526	534	Right-handed alpha
Helix 42	AE6	D	537	540	Right-handed 310
Helix 43	AE7	D	541	555	Right-handed alpha
Helix 44	AE8	D	560	570	Right-handed alpha
Helix 45	AE9	D	571	574	Right-handed 310
Helix 46	AF1	D	576	590	Right-handed alpha
Helix 47	AF2	D	594	601	Right-handed alpha
Helix 48	AF3	D	602	610	Right-handed alpha
Helix 49	AF4	D	614	638	Right-handed alpha
Helix 50	AF5	D	648	656	Right-handed alpha
Helix 51	AF6	D	657	665	Right-handed alpha
Helix 52	AF7	D	670	690	Right-handed alpha
Helix 53	AF8	D	697	713	Right-handed alpha
Helix 54	AF9	D	714	717	Right-handed 310
Helix 55	AG1	D	718	720	Right-handed 310
Helix 56	AG2	D	721	737	Right-handed alpha
Helix 57	AG3	D	749	762	Right-handed alpha
Helix 58	AG4	D	768	780	Right-handed alpha
Helix 59	AG5	D	790	802	Right-handed alpha
Helix 60	AG6	D	811	830	Right-handed alpha
Helix 61	AG7	D	844	855	Right-handed alpha
Helix 62	AG8	D	867	888	Right-handed alpha
Helix 63	AG9	D	889	894	Right-handed 310
Helix 64	AH1	D	895	910	Right-handed alpha
Helix 65	AH2	D	914	930	Right-handed alpha
Helix 66	AH3	D	941	949	Right-handed alpha
Helix 67	AH4	D	965	970	Right-handed alpha
Helix 68	AH5	D	971	974	Right-handed 310
Helix 69	AH6	D	975	991	Right-handed alpha
Helix 70	AH7	D	994	1014	Right-handed alpha
Helix 71	AH8	D	1015	1020	Right-handed alpha
Helix 72	AH9	D	1021	1033	Right-handed alpha
Helix 73	AI1	D	1039	1054	Right-handed alpha
Helix 74	AI2	D	1065	1080	Right-handed alpha
Helix 75	AI3	D	1084	1099	Right-handed alpha
Helix 76	AI4	D	1103	1118	Right-handed alpha
Helix 77	AI5	D	1121	1139	Right-handed alpha
Helix 78	AI6	D	1147	1158	Right-handed alpha
Helix 79	AI7	D	1163	1179	Right-handed alpha
Helix 80	AI8	G	2	15	Right-handed alpha
Helix 81	AI9	G	28	38	Right-handed alpha
Helix 82	AJ1	G	70	75	Right-handed alpha
Helix 83	AJ2	G	76	81	Right-handed 310
Helix 84	AJ3	G	98	109	Right-handed alpha
Helix 85	AJ4	G	134	142	Right-handed alpha
Helix 86	AJ5	G	165	179	Right-handed alpha
Helix 87	AJ6	a	10	29	Right-handed alpha
Helix 88	AJ7	a	48	52	Right-handed 310
Helix 89	AJ8	a	73	80	Right-handed alpha
Helix 90	AJ9	a	102	108	Right-handed alpha
Helix 91	AK1	a	114	128	Right-handed alpha
Helix 92	AK2	a	143	161	Right-handed alpha
Helix 93	AK3	a	182	195	Right-handed alpha
Helix 94	AK4	a	205	216	Right-handed alpha
Helix 95	AK5	a	223	239	Right-handed alpha
Helix 96	AK6	a	251	260	Right-handed alpha
Helix 97	AK7	a	287	294	Right-handed alpha
Helix 98	AK8	a	295	297	Right-handed 310
Helix 99	AK9	a	324	339	Right-handed alpha
Helix 100	AL1	a	384	400	Right-handed alpha
Helix 101	AL2	a	405	410	Right-handed alpha
Helix 102	AL3	a	415	436	Right-handed alpha
Helix 103	AL4	b	9	29	Right-handed alpha
Helix 104	AL5	b	41	46	Right-handed alpha
Helix 105	AL6	b	47	49	Right-handed 310
Helix 106	AL7	b	55	57	Right-handed 310
Helix 107	AL8	b	70	78	Right-handed alpha
Helix 108	AL9	b	81	85	Right-handed 310
Helix 109	AM1	b	86	88	Right-handed 310
Helix 110	AM2	b	100	106	Right-handed alpha
Helix 111	AM3	b	107	126	Right-handed alpha
Helix 112	AM4	b	141	159	Right-handed alpha
Helix 113	AM5	b	180	193	Right-handed alpha
Helix 114	AM6	b	203	213	Right-handed alpha
Helix 115	AM7	b	221	237	Right-handed alpha
Helix 116	AM8	b	237	242	Right-handed alpha
Helix 117	AM9	b	249	258	Right-handed alpha
Helix 118	AN1	b	285	294	Right-handed alpha
Helix 119	AN2	b	295	299	Right-handed 310
Helix 120	AN3	b	322	337	Right-handed alpha
Helix 121	AN4	b	371	373	Right-handed 310
Helix 122	AN5	b	374	390	Right-handed alpha
Helix 123	AN6	b	395	400	Right-handed alpha
Helix 124	AN7	b	404	427	Right-handed alpha

There are 9 sheets in PDB entry 9M1N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	190	first strand
Strand 2	C	206	212	parallel
Strand 3	C	225	231	parallel
Strand 4	C	243	255	parallel
Strand 5	C	257	272	parallel
Strand 6	C	274	285	parallel
Strand 7	C	319	320	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	218	first strand
Strand 2	C	234	237	parallel
Strand 3	C	243	255	parallel
Strand 4	C	257	272	parallel
Strand 5	C	287	290	parallel
Strand 6	C	333	335	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	458	459	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	861	862	first strand
Strand 2	D	865	866	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	57	first strand
Strand 2	G	60	67	anti-parallel
Strand 3	G	16	23	parallel
Strand 4	G	86	92	parallel
Strand 5	G	119	125	parallel
Strand 6	G	154	156	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	92	94	first strand
Strand 2	a	67	69	parallel
Strand 3	a	3	9	parallel
Strand 4	a	132	138	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	269	273	first strand
Strand 2	a	373	381	anti-parallel
Strand 3	a	312	321	anti-parallel
Strand 4	a	351	354	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	91	first strand
Strand 2	b	63	66	parallel
Strand 3	b	3	8	parallel
Strand 4	b	130	136	parallel
Strand 5	b	163	166	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	369	anti-parallel
Strand 9	b	313	318	anti-parallel
Strand 10	b	349	354	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	51	54	first strand
Strand 2	b	58	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1N