Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1P entry

There are 5 chains in PDB entry 9M1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLN 12	LEU 341
B	GLU 3	ASN 340
C	THR 6	ARG 62
N	GLN 1	SER 127
A	VAL 11	LEU 246

There are 31 helices in PDB entry 9M1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	28	60	Right-handed alpha
Helix 2	AA2	R	61	64	Right-handed 310
Helix 3	AA3	R	65	85	Right-handed alpha
Helix 4	AA4	R	85	95	Right-handed alpha
Helix 5	AA5	R	101	136	Right-handed alpha
Helix 6	AA6	R	139	144	Right-handed alpha
Helix 7	AA7	R	145	168	Right-handed alpha
Helix 8	AA8	R	177	184	Right-handed alpha
Helix 9	AA9	R	195	233	Right-handed alpha
Helix 10	AB1	R	250	279	Right-handed alpha
Helix 11	AB2	R	280	283	Right-handed 310
Helix 12	AB3	R	287	309	Right-handed alpha
Helix 13	AB4	R	313	325	Right-handed alpha
Helix 14	AB5	R	326	330	Right-handed 310
Helix 15	AB6	R	332	336	Right-handed 310
Helix 16	AB7	B	4	26	Right-handed alpha
Helix 17	AB8	B	29	34	Right-handed alpha
Helix 18	AB9	C	7	24	Right-handed alpha
Helix 19	AC1	C	29	44	Right-handed alpha
Helix 20	AC2	C	45	48	Right-handed 310
Helix 21	AC3	N	28	32	Right-handed 310
Helix 22	AC4	N	62	65	Right-handed 310
Helix 23	AC5	N	87	91	Right-handed 310
Helix 24	AC6	A	12	36	Right-handed alpha
Helix 25	AC7	A	52	59	Right-handed alpha
Helix 26	AC8	A	95	101	Right-handed 310
Helix 27	AC9	A	117	131	Right-handed alpha
Helix 28	AD1	A	145	156	Right-handed alpha
Helix 29	AD2	A	164	170	Right-handed 310
Helix 30	AD3	A	183	205	Right-handed alpha
Helix 31	AD4	A	222	243	Right-handed alpha

There are 10 sheets in PDB entry 9M1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	75	first strand
Strand 2	A	80	86	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	105	111	parallel
Strand 5	A	138	144	parallel
Strand 6	A	211	214	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1P