Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M1V entry

There are 4 chains in PDB entry 9M1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15GLY 171
B
 GLY 15GLY 171
C
 GLY 15GLY 171
D
 GLY 15GLY 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9M1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 40Right-handed alpha
Helix 2
AA2
A
49 51Right-handed 310
Helix 3
AA3
A
52 62Right-handed alpha
Helix 4
AA4
A
85 94Right-handed alpha
Helix 5
AA5
A
107 119Right-handed alpha
Helix 6
AA6
A
129 146Right-handed alpha
Helix 7
AA7
A
158 171Right-handed alpha
Helix 8
AA8
B
29 40Right-handed alpha
Helix 9
AA9
B
49 51Right-handed 310
Helix 10
AB1
B
52 62Right-handed alpha
Helix 11
AB2
B
85 94Right-handed alpha
Helix 12
AB3
B
107 119Right-handed alpha
Helix 13
AB4
B
129 146Right-handed alpha
Helix 14
AB5
B
158 170Right-handed alpha
Helix 15
AB6
C
29 40Right-handed alpha
Helix 16
AB7
C
49 51Right-handed 310
Helix 17
AB8
C
52 62Right-handed alpha
Helix 18
AB9
C
85 94Right-handed alpha
Helix 19
AC1
C
107 119Right-handed alpha
Helix 20
AC2
C
129 141Right-handed alpha
Helix 21
AC3
C
141 148Right-handed alpha
Helix 22
AC4
C
158 170Right-handed alpha
Helix 23
AC5
D
29 40Right-handed alpha
Helix 24
AC6
D
49 51Right-handed 310
Helix 25
AC7
D
52 62Right-handed alpha
Helix 26
AC8
D
85 95Right-handed alpha
Helix 27
AC9
D
107 119Right-handed alpha
Helix 28
AD1
D
129 141Right-handed alpha
Helix 29
AD2
D
141 148Right-handed alpha
Helix 30
AD3
D
158 171Right-handed alpha
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There are 4 sheets in PDB entry 9M1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
69 73parallel
Strand 3
A
18 24parallel
Strand 4
A
100 105parallel
Strand 5
A
150 153parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
69 73parallel
Strand 3
B
18 24parallel
Strand 4
B
100 105parallel
Strand 5
B
150 153parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 46first strand
Strand 2
C
69 73parallel
Strand 3
C
18 24parallel
Strand 4
C
100 105parallel
Strand 5
C
150 153parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 46first strand
Strand 2
D
69 73parallel
Strand 3
D
18 24parallel
Strand 4
D
100 105parallel
Strand 5
D
150 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il