Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M1W entry

There are 2 chains in PDB entry 9M1W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 439
B
 THR 10LYS 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9M1W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
13 25Right-handed alpha
Helix 3
AA3
A
30 45Right-handed alpha
Helix 4
AA4
A
46 49Right-handed 310
Helix 5
AA5
A
79 86Right-handed alpha
Helix 6
AA6
A
86 92Right-handed alpha
Helix 7
AA7
A
102 110Right-handed alpha
Helix 8
AA8
A
110 119Right-handed alpha
Helix 9
AA9
A
123 146Right-handed alpha
Helix 10
AB1
A
155 176Right-handed alpha
Helix 11
AB2
A
181 192Right-handed alpha
Helix 12
AB3
A
193 197Right-handed 310
Helix 13
AB4
A
219 234Right-handed alpha
Helix 14
AB5
A
240 263Right-handed alpha
Helix 15
AB6
A
269 281Right-handed alpha
Helix 16
AB7
A
282 292Right-handed alpha
Helix 17
AB8
A
298 303Right-handed 310
Helix 18
AB9
A
304 333Right-handed alpha
Helix 19
AC1
A
338 347Right-handed alpha
Helix 20
AC2
A
350 380Right-handed alpha
Helix 21
AC3
A
382 409Right-handed alpha
Helix 22
AC4
A
420 438Right-handed alpha
Helix 23
AC5
B
13 24Right-handed alpha
Helix 24
AC6
B
31 45Right-handed alpha
Helix 25
AC7
B
79 86Right-handed alpha
Helix 26
AC8
B
86 92Right-handed alpha
Helix 27
AC9
B
93 95Right-handed 310
Helix 28
AD1
B
102 110Right-handed alpha
Helix 29
AD2
B
110 119Right-handed alpha
Helix 30
AD3
B
123 137Right-handed alpha
Helix 31
AD4
B
164 176Right-handed alpha
Helix 32
AD5
B
181 192Right-handed alpha
Helix 33
AD6
B
193 197Right-handed 310
Helix 34
AD7
B
210 213Right-handed 310
Helix 35
AD8
B
219 234Right-handed alpha
Helix 36
AD9
B
240 260Right-handed alpha
Helix 37
AE1
B
269 281Right-handed alpha
Helix 38
AE2
B
282 292Right-handed alpha
Helix 39
AE3
B
298 303Right-handed 310
Helix 40
AE4
B
304 326Right-handed alpha
Helix 41
AE5
B
326 331Right-handed alpha
Helix 42
AE6
B
338 348Right-handed alpha
Helix 43
AE7
B
350 380Right-handed alpha
Helix 44
AE8
B
382 409Right-handed alpha
Helix 45
AE9
B
420 432Right-handed alpha
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There are 4 sheets in PDB entry 9M1W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
62 69anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
205 208anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
62 69anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
205 208anti-parallel
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