Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M1Z entry

There are 4 chains in PDB entry 9M1Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	CYS 38	ASP 334
A	CYS 38	ASP 334
B	CYS 38	GLY 333
C	CYS 38	ASP 334

There are 44 helices in PDB entry 9M1Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	100	106	Right-handed alpha
Helix 2	AA2	D	136	146	Right-handed alpha
Helix 3	AA3	D	151	173	Right-handed alpha
Helix 4	AA4	D	221	226	Right-handed alpha
Helix 5	AA5	D	235	253	Right-handed alpha
Helix 6	AA6	D	262	273	Right-handed alpha
Helix 7	AA7	D	279	283	Right-handed 310
Helix 8	AA8	D	284	295	Right-handed alpha
Helix 9	AA9	D	304	311	Right-handed alpha
Helix 10	AB1	D	311	319	Right-handed alpha
Helix 11	AB2	D	323	333	Right-handed alpha
Helix 12	AB3	A	94	99	Right-handed alpha
Helix 13	AB4	A	99	106	Right-handed alpha
Helix 14	AB5	A	136	146	Right-handed alpha
Helix 15	AB6	A	151	173	Right-handed alpha
Helix 16	AB7	A	221	226	Right-handed alpha
Helix 17	AB8	A	235	253	Right-handed alpha
Helix 18	AB9	A	262	273	Right-handed alpha
Helix 19	AC1	A	284	295	Right-handed alpha
Helix 20	AC2	A	304	311	Right-handed alpha
Helix 21	AC3	A	311	319	Right-handed alpha
Helix 22	AC4	A	323	333	Right-handed alpha
Helix 23	AC5	B	93	97	Right-handed 310
Helix 24	AC6	B	98	100	Right-handed 310
Helix 25	AC7	B	101	106	Right-handed alpha
Helix 26	AC8	B	136	147	Right-handed alpha
Helix 27	AC9	B	151	171	Right-handed alpha
Helix 28	AD1	B	221	226	Right-handed alpha
Helix 29	AD2	B	235	253	Right-handed alpha
Helix 30	AD3	B	262	273	Right-handed alpha
Helix 31	AD4	B	285	295	Right-handed alpha
Helix 32	AD5	B	304	310	Right-handed alpha
Helix 33	AD6	B	311	316	Right-handed alpha
Helix 34	AD7	B	323	333	Right-handed alpha
Helix 35	AD8	C	96	106	Right-handed alpha
Helix 36	AD9	C	136	147	Right-handed alpha
Helix 37	AE1	C	151	171	Right-handed alpha
Helix 38	AE2	C	221	226	Right-handed alpha
Helix 39	AE3	C	235	253	Right-handed alpha
Helix 40	AE4	C	262	273	Right-handed alpha
Helix 41	AE5	C	284	296	Right-handed alpha
Helix 42	AE6	C	304	311	Right-handed alpha
Helix 43	AE7	C	311	319	Right-handed alpha
Helix 44	AE8	C	323	333	Right-handed alpha

There are 9 sheets in PDB entry 9M1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	81	84	anti-parallel
Strand 3	D	125	129	anti-parallel
Strand 4	D	115	117	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	186	187	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	67	68	anti-parallel
Strand 3	A	80	82	anti-parallel
Strand 4	A	125	129	anti-parallel
Strand 5	A	115	120	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	186	187	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	126	129	anti-parallel
Strand 4	B	115	119	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	77	78	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	185	187	anti-parallel
Strand 3	B	193	195	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	66	68	anti-parallel
Strand 3	C	80	83	anti-parallel
Strand 4	C	126	129	anti-parallel
Strand 5	C	115	119	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	185	187	anti-parallel
Strand 3	C	193	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M1Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M1Z