Analysis of interatomic Contacts of Structural Units in PDB entry:
9M20


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M20 entry

There is 1 chain in PDB entry 9M20 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13ALA 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9M20. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
48 62Right-handed alpha
Helix 3
AA3
A
88 106Right-handed alpha
Helix 4
AA4
A
121 133Right-handed alpha
Helix 5
AA5
A
141 146Right-handed alpha
Helix 6
AA6
A
146 162Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
195 213Right-handed alpha
Helix 9
AA9
A
230 241Right-handed 310
Helix 10
AB1
A
246 253Right-handed alpha
Helix 11
AB2
A
264 269Right-handed alpha
Helix 12
AB3
A
273 295Right-handed alpha
Helix 13
AB4
A
313 333Right-handed alpha
Helix 14
AB5
A
351 355Right-handed 310
Helix 15
AB6
A
361 364Right-handed 310
Helix 16
AB7
A
365 381Right-handed alpha
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There are 3 sheets in PDB entry 9M20. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
21 24anti-parallel
Strand 3
A
27 29anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
178 182parallel
Strand 3
A
108 112parallel
Strand 4
A
66 70parallel
Strand 5
A
31 35parallel
Strand 6
A
338 343parallel
Strand 7
A
300 305parallel
Strand 8
A
259 263parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
86 87anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il