Analysis of interatomic Contacts of Structural Units in PDB entry:
9M2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M2J entry

There is 1 chain in PDB entry 9M2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 42GLU 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9M2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 53Right-handed alpha
Helix 2
AA2
A
82 86Right-handed 310
Helix 3
AA3
A
139 143Right-handed 310
Helix 4
AA4
A
145 150Right-handed 310
Helix 5
AA5
A
189 193Right-handed 310
Helix 6
AA6
A
246 251Right-handed 310
Helix 7
AA7
A
254 258Right-handed 310
Helix 8
AA8
A
287 292Right-handed alpha
Helix 9
AA9
A
411 414Right-handed 310
Helix 10
AB1
A
465 469Right-handed 310
Helix 11
AB2
A
573 579Right-handed alpha
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There are 10 sheets in PDB entry 9M2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
512 515parallel
Strand 3
A
519 523anti-parallel
Strand 4
A
528 533anti-parallel
Strand 5
A
539 544anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 93first strand
Strand 2
A
592 597anti-parallel
Strand 3
A
561 568anti-parallel
Strand 4
A
553 558anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
129 134anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
169 174anti-parallel
Strand 4
A
180 185anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
206 209anti-parallel
Strand 3
A
221 226anti-parallel
Strand 4
A
232 237anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
275 279anti-parallel
Strand 3
A
303 307anti-parallel
Strand 4
A
314 319anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 340first strand
Strand 2
A
362 368anti-parallel
Strand 3
A
376 380anti-parallel
Strand 4
A
386 390anti-parallel
Strand 5
A
350 353anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 401first strand
Strand 2
A
407 409anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
453 459anti-parallel
Strand 3
A
472 478anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
445 451anti-parallel
Strand 3
A
486 492anti-parallel
Strand 4
A
498 504anti-parallel
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