Analysis of interatomic Contacts of Structural Units in PDB entry:
9M35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M35 entry

There are 2 chains in PDB entry 9M35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LYS 440
B
 ASP 2LYS 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 9M35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
39 42Right-handed 310
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
56 61Right-handed alpha
Helix 5
AA5
A
62 64Right-handed 310
Helix 6
AA6
A
87 103Right-handed alpha
Helix 7
AA7
A
115 125Right-handed alpha
Helix 8
AA8
A
126 130Right-handed 310
Helix 9
AA9
A
141 154Right-handed alpha
Helix 10
AB1
A
161 182Right-handed alpha
Helix 11
AB2
A
196 210Right-handed alpha
Helix 12
AB3
A
212 214Right-handed 310
Helix 13
AB4
A
249 254Right-handed alpha
Helix 14
AB5
A
270 277Right-handed alpha
Helix 15
AB6
A
294 302Right-handed alpha
Helix 16
AB7
A
319 322Right-handed 310
Helix 17
AB8
A
323 334Right-handed alpha
Helix 18
AB9
A
340 357Right-handed alpha
Helix 19
AC1
A
387 403Right-handed alpha
Helix 20
AC2
A
412 426Right-handed alpha
Helix 21
AC3
A
430 440Right-handed alpha
Helix 22
AC4
B
3 13Right-handed alpha
Helix 23
AC5
B
39 42Right-handed 310
Helix 24
AC6
B
43 53Right-handed alpha
Helix 25
AC7
B
54 59Right-handed 310
Helix 26
AC8
B
61 64Right-handed 310
Helix 27
AC9
B
87 103Right-handed alpha
Helix 28
AD1
B
115 125Right-handed alpha
Helix 29
AD2
B
126 130Right-handed 310
Helix 30
AD3
B
141 154Right-handed alpha
Helix 31
AD4
B
161 182Right-handed alpha
Helix 32
AD5
B
184 188Right-handed 310
Helix 33
AD6
B
196 210Right-handed alpha
Helix 34
AD7
B
212 214Right-handed 310
Helix 35
AD8
B
249 253Right-handed 310
Helix 36
AD9
B
270 276Right-handed alpha
Helix 37
AE1
B
294 302Right-handed alpha
Helix 38
AE2
B
319 322Right-handed 310
Helix 39
AE3
B
323 334Right-handed alpha
Helix 40
AE4
B
340 357Right-handed alpha
Helix 41
AE5
B
387 403Right-handed alpha
Helix 42
AE6
B
412 426Right-handed alpha
Helix 43
AE7
B
430 440Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9M35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
B
22 24anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
66 71parallel
Strand 3
A
132 135parallel
Strand 4
A
158 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
190 193parallel
Strand 4
A
259 262parallel
Strand 5
A
282 285parallel
Strand 6
A
306 309parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 110first strand
Strand 2
B
66 71parallel
Strand 3
B
132 135parallel
Strand 4
B
158 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
216 220anti-parallel
Strand 3
B
190 193parallel
Strand 4
B
259 262parallel
Strand 5
B
282 285parallel
Strand 6
B
306 309parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il