Analysis of interatomic Contacts of Structural Units in PDB entry:
9M3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M3B entry

There are 2 chains in PDB entry 9M3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLU 333
B
 MET 1ILE 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9M3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 18Right-handed alpha
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
41 46Right-handed alpha
Helix 4
AA4
A
53 67Right-handed alpha
Helix 5
AA5
A
89 108Right-handed alpha
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
122 134Right-handed alpha
Helix 8
AA8
A
149 163Right-handed alpha
Helix 9
AA9
A
174 176Right-handed 310
Helix 10
AB1
A
181 191Right-handed alpha
Helix 11
AB2
A
195 208Right-handed alpha
Helix 12
AB3
A
211 216Right-handed 310
Helix 13
AB4
A
223 230Right-handed alpha
Helix 14
AB5
A
231 233Right-handed 310
Helix 15
AB6
A
234 239Right-handed alpha
Helix 16
AB7
A
248 253Right-handed 310
Helix 17
AB8
A
255 257Right-handed 310
Helix 18
AB9
A
279 290Right-handed alpha
Helix 19
AC1
A
302 306Right-handed 310
Helix 20
AC2
A
313 333Right-handed alpha
Helix 21
AC3
B
2 6Right-handed 310
Helix 22
AC4
B
54 56Right-handed 310
Helix 23
AC5
B
70 74Right-handed alpha
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There are 4 sheets in PDB entry 9M3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
37 40parallel
Strand 3
A
70 76parallel
Strand 4
A
111 114parallel
Strand 5
A
136 141parallel
Strand 6
A
167 172parallel
Strand 7
A
259 266parallel
Strand 8
A
295 300parallel
Strand 9
A
4 8parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
58 61anti-parallel
Strand 5
B
68 69anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
80 81anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
41 48anti-parallel
Strand 3
B
100 109anti-parallel
Strand 4
B
118 127anti-parallel
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