Analysis of interatomic Contacts of Structural Units in PDB entry:
9M3Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M3Q entry

There are 5 chains in PDB entry 9M3Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 11	VAL 341
B	GLU 3	ASN 340
C	THR 6	ARG 62
N	GLN 1	SER 127
A	VAL 11	LEU 246

There are 33 helices in PDB entry 9M3Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	28	60	Right-handed alpha
Helix 2	AA2	R	61	64	Right-handed 310
Helix 3	AA3	R	65	95	Right-handed alpha
Helix 4	AA4	R	102	136	Right-handed alpha
Helix 5	AA5	R	139	144	Right-handed alpha
Helix 6	AA6	R	145	168	Right-handed alpha
Helix 7	AA7	R	171	175	Right-handed 310
Helix 8	AA8	R	177	184	Right-handed alpha
Helix 9	AA9	R	195	206	Right-handed alpha
Helix 10	AB1	R	207	235	Right-handed alpha
Helix 11	AB2	R	251	269	Right-handed alpha
Helix 12	AB3	R	269	279	Right-handed alpha
Helix 13	AB4	R	280	283	Right-handed 310
Helix 14	AB5	R	287	310	Right-handed alpha
Helix 15	AB6	R	313	325	Right-handed alpha
Helix 16	AB7	R	326	330	Right-handed 310
Helix 17	AB8	R	332	336	Right-handed 310
Helix 18	AB9	B	4	26	Right-handed alpha
Helix 19	AC1	B	29	34	Right-handed alpha
Helix 20	AC2	C	7	24	Right-handed alpha
Helix 21	AC3	C	29	44	Right-handed alpha
Helix 22	AC4	C	45	48	Right-handed 310
Helix 23	AC5	N	28	32	Right-handed 310
Helix 24	AC6	N	87	91	Right-handed 310
Helix 25	AC7	A	12	37	Right-handed alpha
Helix 26	AC8	A	52	59	Right-handed alpha
Helix 27	AC9	A	95	100	Right-handed 310
Helix 28	AD1	A	114	116	Right-handed 310
Helix 29	AD2	A	117	131	Right-handed alpha
Helix 30	AD3	A	145	156	Right-handed alpha
Helix 31	AD4	A	159	163	Right-handed 310
Helix 32	AD5	A	183	205	Right-handed alpha
Helix 33	AD6	A	222	243	Right-handed alpha

There are 10 sheets in PDB entry 9M3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	6	7	first strand
Strand 2	N	18	23	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	75	first strand
Strand 2	A	80	86	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	105	111	parallel
Strand 5	A	138	144	parallel
Strand 6	A	211	215	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M3Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M3Q