Analysis of interatomic Contacts of Structural Units in PDB entry:
9M3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M3Y entry

There are 6 chains in PDB entry 9M3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLU 779
B	LYS 25	GLU 779
C	LYS 25	GLU 779
D	LYS 25	GLU 779
E	LYS 25	GLU 779
F	LYS 25	GLU 779

There are198 helices in PDB entry 9M3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	52	Right-handed alpha
Helix 2	AA2	A	89	97	Right-handed alpha
Helix 3	AA3	A	133	143	Right-handed alpha
Helix 4	AA4	A	205	209	Right-handed 310
Helix 5	AA5	A	212	229	Right-handed alpha
Helix 6	AA6	A	231	237	Right-handed alpha
Helix 7	AA7	A	253	265	Right-handed alpha
Helix 8	AA8	A	274	280	Right-handed alpha
Helix 9	AA9	A	283	299	Right-handed alpha
Helix 10	AB1	A	315	319	Right-handed 310
Helix 11	AB2	A	322	337	Right-handed alpha
Helix 12	AB3	A	357	362	Right-handed 310
Helix 13	AB4	A	376	388	Right-handed alpha
Helix 14	AB5	A	398	406	Right-handed alpha
Helix 15	AB6	A	410	433	Right-handed alpha
Helix 16	AB7	A	441	447	Right-handed alpha
Helix 17	AB8	A	451	462	Right-handed alpha
Helix 18	AB9	A	478	482	Right-handed 310
Helix 19	AC1	A	485	502	Right-handed alpha
Helix 20	AC2	A	502	510	Right-handed alpha
Helix 21	AC3	A	526	538	Right-handed alpha
Helix 22	AC4	A	547	552	Right-handed alpha
Helix 23	AC5	A	559	571	Right-handed alpha
Helix 24	AC6	A	581	585	Right-handed 310
Helix 25	AC7	A	600	615	Right-handed alpha
Helix 26	AC8	A	616	618	Right-handed 310
Helix 27	AC9	A	629	633	Right-handed 310
Helix 28	AD1	A	653	665	Right-handed alpha
Helix 29	AD2	A	676	683	Right-handed alpha
Helix 30	AD3	A	687	720	Right-handed alpha
Helix 31	AD4	A	736	744	Right-handed alpha
Helix 32	AD5	A	745	747	Right-handed 310
Helix 33	AD6	A	752	764	Right-handed alpha
Helix 34	AD7	B	46	52	Right-handed alpha
Helix 35	AD8	B	89	97	Right-handed alpha
Helix 36	AD9	B	133	143	Right-handed alpha
Helix 37	AE1	B	205	209	Right-handed 310
Helix 38	AE2	B	212	229	Right-handed alpha
Helix 39	AE3	B	231	237	Right-handed alpha
Helix 40	AE4	B	253	265	Right-handed alpha
Helix 41	AE5	B	274	280	Right-handed alpha
Helix 42	AE6	B	283	299	Right-handed alpha
Helix 43	AE7	B	315	319	Right-handed 310
Helix 44	AE8	B	322	337	Right-handed alpha
Helix 45	AE9	B	357	362	Right-handed 310
Helix 46	AF1	B	376	388	Right-handed alpha
Helix 47	AF2	B	398	406	Right-handed alpha
Helix 48	AF3	B	410	433	Right-handed alpha
Helix 49	AF4	B	441	447	Right-handed alpha
Helix 50	AF5	B	451	462	Right-handed alpha
Helix 51	AF6	B	478	482	Right-handed 310
Helix 52	AF7	B	485	502	Right-handed alpha
Helix 53	AF8	B	502	510	Right-handed alpha
Helix 54	AF9	B	526	538	Right-handed alpha
Helix 55	AG1	B	547	552	Right-handed alpha
Helix 56	AG2	B	559	571	Right-handed alpha
Helix 57	AG3	B	581	585	Right-handed 310
Helix 58	AG4	B	600	615	Right-handed alpha
Helix 59	AG5	B	616	618	Right-handed 310
Helix 60	AG6	B	629	633	Right-handed 310
Helix 61	AG7	B	653	665	Right-handed alpha
Helix 62	AG8	B	676	683	Right-handed alpha
Helix 63	AG9	B	687	720	Right-handed alpha
Helix 64	AH1	B	736	744	Right-handed alpha
Helix 65	AH2	B	745	747	Right-handed 310
Helix 66	AH3	B	752	764	Right-handed alpha
Helix 67	AH4	C	46	52	Right-handed alpha
Helix 68	AH5	C	89	97	Right-handed alpha
Helix 69	AH6	C	133	143	Right-handed alpha
Helix 70	AH7	C	205	209	Right-handed 310
Helix 71	AH8	C	212	229	Right-handed alpha
Helix 72	AH9	C	231	237	Right-handed alpha
Helix 73	AI1	C	253	265	Right-handed alpha
Helix 74	AI2	C	274	280	Right-handed alpha
Helix 75	AI3	C	283	299	Right-handed alpha
Helix 76	AI4	C	315	319	Right-handed 310
Helix 77	AI5	C	322	337	Right-handed alpha
Helix 78	AI6	C	357	362	Right-handed 310
Helix 79	AI7	C	376	388	Right-handed alpha
Helix 80	AI8	C	398	406	Right-handed alpha
Helix 81	AI9	C	410	433	Right-handed alpha
Helix 82	AJ1	C	441	447	Right-handed alpha
Helix 83	AJ2	C	451	462	Right-handed alpha
Helix 84	AJ3	C	478	482	Right-handed 310
Helix 85	AJ4	C	485	502	Right-handed alpha
Helix 86	AJ5	C	502	510	Right-handed alpha
Helix 87	AJ6	C	526	538	Right-handed alpha
Helix 88	AJ7	C	547	552	Right-handed alpha
Helix 89	AJ8	C	559	571	Right-handed alpha
Helix 90	AJ9	C	581	585	Right-handed 310
Helix 91	AK1	C	600	615	Right-handed alpha
Helix 92	AK2	C	616	618	Right-handed 310
Helix 93	AK3	C	629	633	Right-handed 310
Helix 94	AK4	C	653	665	Right-handed alpha
Helix 95	AK5	C	676	683	Right-handed alpha
Helix 96	AK6	C	687	720	Right-handed alpha
Helix 97	AK7	C	736	744	Right-handed alpha
Helix 98	AK8	C	745	747	Right-handed 310
Helix 99	AK9	C	752	764	Right-handed alpha
Helix 100	AL1	D	46	52	Right-handed alpha
Helix 101	AL2	D	89	97	Right-handed alpha
Helix 102	AL3	D	133	143	Right-handed alpha
Helix 103	AL4	D	205	209	Right-handed 310
Helix 104	AL5	D	212	229	Right-handed alpha
Helix 105	AL6	D	231	237	Right-handed alpha
Helix 106	AL7	D	253	265	Right-handed alpha
Helix 107	AL8	D	274	280	Right-handed alpha
Helix 108	AL9	D	283	299	Right-handed alpha
Helix 109	AM1	D	315	319	Right-handed 310
Helix 110	AM2	D	322	337	Right-handed alpha
Helix 111	AM3	D	357	362	Right-handed 310
Helix 112	AM4	D	376	388	Right-handed alpha
Helix 113	AM5	D	398	406	Right-handed alpha
Helix 114	AM6	D	410	433	Right-handed alpha
Helix 115	AM7	D	441	447	Right-handed alpha
Helix 116	AM8	D	451	462	Right-handed alpha
Helix 117	AM9	D	478	482	Right-handed 310
Helix 118	AN1	D	485	502	Right-handed alpha
Helix 119	AN2	D	502	510	Right-handed alpha
Helix 120	AN3	D	526	538	Right-handed alpha
Helix 121	AN4	D	547	552	Right-handed alpha
Helix 122	AN5	D	559	571	Right-handed alpha
Helix 123	AN6	D	581	585	Right-handed 310
Helix 124	AN7	D	600	615	Right-handed alpha
Helix 125	AN8	D	616	618	Right-handed 310
Helix 126	AN9	D	629	633	Right-handed 310
Helix 127	AO1	D	653	665	Right-handed alpha
Helix 128	AO2	D	676	683	Right-handed alpha
Helix 129	AO3	D	687	720	Right-handed alpha
Helix 130	AO4	D	736	744	Right-handed alpha
Helix 131	AO5	D	745	747	Right-handed 310
Helix 132	AO6	D	752	764	Right-handed alpha
Helix 133	AO7	E	46	52	Right-handed alpha
Helix 134	AO8	E	89	97	Right-handed alpha
Helix 135	AO9	E	133	143	Right-handed alpha
Helix 136	AP1	E	205	209	Right-handed 310
Helix 137	AP2	E	212	229	Right-handed alpha
Helix 138	AP3	E	231	237	Right-handed alpha
Helix 139	AP4	E	253	265	Right-handed alpha
Helix 140	AP5	E	274	280	Right-handed alpha
Helix 141	AP6	E	283	299	Right-handed alpha
Helix 142	AP7	E	315	319	Right-handed 310
Helix 143	AP8	E	322	337	Right-handed alpha
Helix 144	AP9	E	357	362	Right-handed 310
Helix 145	AQ1	E	376	388	Right-handed alpha
Helix 146	AQ2	E	398	406	Right-handed alpha
Helix 147	AQ3	E	410	433	Right-handed alpha
Helix 148	AQ4	E	441	447	Right-handed alpha
Helix 149	AQ5	E	451	462	Right-handed alpha
Helix 150	AQ6	E	478	482	Right-handed 310
Helix 151	AQ7	E	485	502	Right-handed alpha
Helix 152	AQ8	E	502	510	Right-handed alpha
Helix 153	AQ9	E	526	538	Right-handed alpha
Helix 154	AR1	E	547	552	Right-handed alpha
Helix 155	AR2	E	559	571	Right-handed alpha
Helix 156	AR3	E	581	585	Right-handed 310
Helix 157	AR4	E	600	615	Right-handed alpha
Helix 158	AR5	E	616	618	Right-handed 310
Helix 159	AR6	E	629	633	Right-handed 310
Helix 160	AR7	E	653	665	Right-handed alpha
Helix 161	AR8	E	676	683	Right-handed alpha
Helix 162	AR9	E	687	720	Right-handed alpha
Helix 163	AS1	E	736	744	Right-handed alpha
Helix 164	AS2	E	745	747	Right-handed 310
Helix 165	AS3	E	752	764	Right-handed alpha
Helix 166	AS4	F	46	52	Right-handed alpha
Helix 167	AS5	F	89	97	Right-handed alpha
Helix 168	AS6	F	133	143	Right-handed alpha
Helix 169	AS7	F	205	209	Right-handed 310
Helix 170	AS8	F	212	229	Right-handed alpha
Helix 171	AS9	F	231	237	Right-handed alpha
Helix 172	AT1	F	253	265	Right-handed alpha
Helix 173	AT2	F	274	280	Right-handed alpha
Helix 174	AT3	F	283	299	Right-handed alpha
Helix 175	AT4	F	315	319	Right-handed 310
Helix 176	AT5	F	322	337	Right-handed alpha
Helix 177	AT6	F	357	362	Right-handed 310
Helix 178	AT7	F	376	388	Right-handed alpha
Helix 179	AT8	F	398	406	Right-handed alpha
Helix 180	AT9	F	410	433	Right-handed alpha
Helix 181	AU1	F	441	447	Right-handed alpha
Helix 182	AU2	F	451	462	Right-handed alpha
Helix 183	AU3	F	478	482	Right-handed 310
Helix 184	AU4	F	485	502	Right-handed alpha
Helix 185	AU5	F	502	510	Right-handed alpha
Helix 186	AU6	F	526	538	Right-handed alpha
Helix 187	AU7	F	547	552	Right-handed alpha
Helix 188	AU8	F	559	571	Right-handed alpha
Helix 189	AU9	F	581	585	Right-handed 310
Helix 190	AV1	F	600	615	Right-handed alpha
Helix 191	AV2	F	616	618	Right-handed 310
Helix 192	AV3	F	629	633	Right-handed 310
Helix 193	AV4	F	653	665	Right-handed alpha
Helix 194	AV5	F	676	683	Right-handed alpha
Helix 195	AV6	F	687	720	Right-handed alpha
Helix 196	AV7	F	736	744	Right-handed alpha
Helix 197	AV8	F	745	747	Right-handed 310
Helix 198	AV9	F	752	764	Right-handed alpha

There are 30 sheets in PDB entry 9M3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	85	88	parallel
Strand 3	A	42	45	anti-parallel
Strand 4	A	70	77	parallel
Strand 5	A	60	64	anti-parallel
Strand 6	A	103	108	anti-parallel
Strand 7	A	29	34	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	163	172	anti-parallel
Strand 3	A	117	122	anti-parallel
Strand 4	A	185	187	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	177	179	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	273	first strand
Strand 2	A	302	307	parallel
Strand 3	A	344	350	parallel
Strand 4	A	243	247	parallel
Strand 5	A	368	371	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	546	first strand
Strand 2	A	575	580	parallel
Strand 3	A	621	627	parallel
Strand 4	A	516	520	parallel
Strand 5	A	645	648	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	85	88	parallel
Strand 3	B	42	45	anti-parallel
Strand 4	B	70	77	parallel
Strand 5	B	60	64	anti-parallel
Strand 6	B	103	108	anti-parallel
Strand 7	B	29	34	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	160	first strand
Strand 2	B	163	172	anti-parallel
Strand 3	B	117	122	anti-parallel
Strand 4	B	185	187	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	177	179	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	273	first strand
Strand 2	B	302	307	parallel
Strand 3	B	344	350	parallel
Strand 4	B	243	247	parallel
Strand 5	B	368	371	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	546	first strand
Strand 2	B	575	580	parallel
Strand 3	B	621	627	parallel
Strand 4	B	516	520	parallel
Strand 5	B	645	648	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	34	first strand
Strand 2	C	85	88	parallel
Strand 3	C	42	45	anti-parallel
Strand 4	C	70	77	parallel
Strand 5	C	60	64	anti-parallel
Strand 6	C	103	108	anti-parallel
Strand 7	C	29	34	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	160	first strand
Strand 2	C	163	172	anti-parallel
Strand 3	C	117	122	anti-parallel
Strand 4	C	185	187	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	151	first strand
Strand 2	C	177	179	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	273	first strand
Strand 2	C	302	307	parallel
Strand 3	C	344	350	parallel
Strand 4	C	243	247	parallel
Strand 5	C	368	371	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	546	first strand
Strand 2	C	575	580	parallel
Strand 3	C	621	627	parallel
Strand 4	C	516	520	parallel
Strand 5	C	645	648	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	34	first strand
Strand 2	D	85	88	parallel
Strand 3	D	42	45	anti-parallel
Strand 4	D	70	77	parallel
Strand 5	D	60	64	anti-parallel
Strand 6	D	103	108	anti-parallel
Strand 7	D	29	34	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	160	first strand
Strand 2	D	163	172	anti-parallel
Strand 3	D	117	122	anti-parallel
Strand 4	D	185	187	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	177	179	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	273	first strand
Strand 2	D	302	307	parallel
Strand 3	D	344	350	parallel
Strand 4	D	243	247	parallel
Strand 5	D	368	371	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	546	first strand
Strand 2	D	575	580	parallel
Strand 3	D	621	627	parallel
Strand 4	D	516	520	parallel
Strand 5	D	645	648	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	34	first strand
Strand 2	E	85	88	parallel
Strand 3	E	42	45	anti-parallel
Strand 4	E	70	77	parallel
Strand 5	E	60	64	anti-parallel
Strand 6	E	103	108	anti-parallel
Strand 7	E	29	34	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	163	172	anti-parallel
Strand 3	E	117	122	anti-parallel
Strand 4	E	185	187	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	151	first strand
Strand 2	E	177	179	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	273	first strand
Strand 2	E	302	307	parallel
Strand 3	E	344	350	parallel
Strand 4	E	243	247	parallel
Strand 5	E	368	371	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	546	first strand
Strand 2	E	575	580	parallel
Strand 3	E	621	627	parallel
Strand 4	E	516	520	parallel
Strand 5	E	645	648	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	34	first strand
Strand 2	F	85	88	parallel
Strand 3	F	42	45	anti-parallel
Strand 4	F	70	77	parallel
Strand 5	F	60	64	anti-parallel
Strand 6	F	103	108	anti-parallel
Strand 7	F	29	34	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	160	first strand
Strand 2	F	163	172	anti-parallel
Strand 3	F	117	122	anti-parallel
Strand 4	F	185	187	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	151	first strand
Strand 2	F	177	179	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	273	first strand
Strand 2	F	302	307	parallel
Strand 3	F	344	350	parallel
Strand 4	F	243	247	parallel
Strand 5	F	368	371	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	546	first strand
Strand 2	F	575	580	parallel
Strand 3	F	621	627	parallel
Strand 4	F	516	520	parallel
Strand 5	F	645	648	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M3Y