Analysis of interatomic Contacts of Structural Units in PDB entry:
9M41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M41 entry

There are 2 chains in PDB entry 9M41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 85MET 520
B
 THR 83LYS 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9M41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 109Right-handed alpha
Helix 2
AA2
A
112 119Right-handed alpha
Helix 3
AA3
A
119 131Right-handed alpha
Helix 4
AA4
A
228 236Right-handed alpha
Helix 5
AA5
A
244 248Right-handed alpha
Helix 6
AA6
A
287 299Right-handed alpha
Helix 7
AA7
A
330 336Right-handed alpha
Helix 8
AA8
A
341 362Right-handed alpha
Helix 9
AA9
A
411 416Right-handed alpha
Helix 10
AB1
A
422 439Right-handed alpha
Helix 11
AB2
A
447 459Right-handed alpha
Helix 12
AB3
A
465 469Right-handed 310
Helix 13
AB4
A
470 481Right-handed alpha
Helix 14
AB5
A
490 495Right-handed alpha
Helix 15
AB6
A
499 503Right-handed 310
Helix 16
AB7
A
505 508Right-handed 310
Helix 17
AB8
A
509 520Right-handed alpha
Helix 18
AB9
B
99 108Right-handed alpha
Helix 19
AC1
B
112 119Right-handed alpha
Helix 20
AC2
B
119 133Right-handed alpha
Helix 21
AC3
B
228 236Right-handed alpha
Helix 22
AC4
B
244 248Right-handed alpha
Helix 23
AC5
B
288 299Right-handed alpha
Helix 24
AC6
B
330 336Right-handed alpha
Helix 25
AC7
B
341 362Right-handed alpha
Helix 26
AC8
B
386 390Right-handed 310
Helix 27
AC9
B
411 416Right-handed alpha
Helix 28
AD1
B
422 439Right-handed alpha
Helix 29
AD2
B
447 458Right-handed alpha
Helix 30
AD3
B
465 469Right-handed 310
Helix 31
AD4
B
470 481Right-handed alpha
Helix 32
AD5
B
490 496Right-handed alpha
Helix 33
AD6
B
497 503Right-handed 310
Helix 34
AD7
B
505 508Right-handed 310
Helix 35
AD8
B
509 520Right-handed alpha
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There are 5 sheets in PDB entry 9M41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
95 96anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
309 315parallel
Strand 3
A
318 324anti-parallel
Strand 4
A
274 281anti-parallel
Strand 5
A
262 268anti-parallel
Strand 6
A
249 256anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
382 384anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 256first strand
Strand 2
B
262 268anti-parallel
Strand 3
B
274 281anti-parallel
Strand 4
B
318 324anti-parallel
Strand 5
B
309 315anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 376first strand
Strand 2
B
382 384anti-parallel
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