Analysis of interatomic Contacts of Structural Units in PDB entry:
9M58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M58 entry

There are 2 chains in PDB entry 9M58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	PHE 462
B	THR 25	PHE 462

There are 6 helices in PDB entry 9M58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	95	Right-handed 310
Helix 2	AA2	A	261	263	Right-handed 310
Helix 3	AA3	A	442	446	Right-handed 310
Helix 4	AA4	B	91	95	Right-handed 310
Helix 5	AA5	B	261	263	Right-handed 310
Helix 6	AA6	B	442	446	Right-handed 310

There are 15 sheets in PDB entry 9M58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	34	first strand
Strand 2	A	40	49	anti-parallel
Strand 3	A	52	59	anti-parallel
Strand 4	A	132	138	anti-parallel
Strand 5	A	123	126	anti-parallel
Strand 6	A	65	72	anti-parallel
Strand 7	A	153	157	anti-parallel
Strand 8	A	174	182	anti-parallel
Strand 9	A	28	34	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	191	first strand
Strand 2	A	455	460	anti-parallel
Strand 3	A	435	440	anti-parallel
Strand 4	A	426	432	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	205	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	221	225	anti-parallel
Strand 4	A	231	235	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	256	259	anti-parallel
Strand 3	A	265	269	anti-parallel
Strand 4	A	275	280	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	294	first strand
Strand 2	A	300	304	anti-parallel
Strand 3	A	309	313	anti-parallel
Strand 4	A	319	324	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	343	first strand
Strand 2	A	349	354	anti-parallel
Strand 3	A	359	364	anti-parallel
Strand 4	A	370	374	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	386	first strand
Strand 2	A	389	394	anti-parallel
Strand 3	A	399	405	anti-parallel
Strand 4	A	412	418	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	125	126	anti-parallel
Strand 3	B	132	138	anti-parallel
Strand 4	B	52	59	anti-parallel
Strand 5	B	40	49	anti-parallel
Strand 6	B	28	34	anti-parallel
Strand 7	B	181	182	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	153	156	anti-parallel
Strand 3	B	176	179	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	455	460	anti-parallel
Strand 3	B	435	440	anti-parallel
Strand 4	B	426	432	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	210	215	anti-parallel
Strand 3	B	221	225	anti-parallel
Strand 4	B	231	235	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	256	259	anti-parallel
Strand 3	B	265	269	anti-parallel
Strand 4	B	275	280	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	294	first strand
Strand 2	B	300	304	anti-parallel
Strand 3	B	309	313	anti-parallel
Strand 4	B	319	324	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	343	first strand
Strand 2	B	349	354	anti-parallel
Strand 3	B	359	364	anti-parallel
Strand 4	B	370	374	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	386	first strand
Strand 2	B	389	394	anti-parallel
Strand 3	B	399	405	anti-parallel
Strand 4	B	412	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M58

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M58