Analysis of interatomic Contacts of Structural Units in PDB entry:
9M5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M5M entry

There are 2 chains in PDB entry 9M5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 98PRO 631
B
 ASN 100PRO 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9M5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 110Right-handed alpha
Helix 2
AA2
A
125 129Right-handed 310
Helix 3
AA3
A
140 149Right-handed alpha
Helix 4
AA4
A
219 221Right-handed 310
Helix 5
AA5
A
224 233Right-handed alpha
Helix 6
AA6
A
280 285Right-handed alpha
Helix 7
AA7
A
298 305Right-handed alpha
Helix 8
AA8
A
305 310Right-handed alpha
Helix 9
AA9
A
312 336Right-handed alpha
Helix 10
AB1
A
373 383Right-handed alpha
Helix 11
AB2
A
422 441Right-handed alpha
Helix 12
AB3
A
443 457Right-handed alpha
Helix 13
AB4
A
473 483Right-handed alpha
Helix 14
AB5
A
499 515Right-handed alpha
Helix 15
AB6
A
525 529Right-handed 310
Helix 16
AB7
A
564 575Right-handed alpha
Helix 17
AB8
A
578 581Right-handed 310
Helix 18
AB9
A
582 588Right-handed alpha
Helix 19
AC1
A
603 612Right-handed alpha
Helix 20
AC2
A
615 619Right-handed 310
Helix 21
AC3
B
101 110Right-handed alpha
Helix 22
AC4
B
125 129Right-handed 310
Helix 23
AC5
B
140 149Right-handed alpha
Helix 24
AC6
B
219 221Right-handed 310
Helix 25
AC7
B
224 233Right-handed alpha
Helix 26
AC8
B
280 286Right-handed alpha
Helix 27
AC9
B
298 305Right-handed alpha
Helix 28
AD1
B
305 310Right-handed alpha
Helix 29
AD2
B
312 336Right-handed alpha
Helix 30
AD3
B
353 357Right-handed 310
Helix 31
AD4
B
373 383Right-handed alpha
Helix 32
AD5
B
422 441Right-handed alpha
Helix 33
AD6
B
444 457Right-handed alpha
Helix 34
AD7
B
473 483Right-handed alpha
Helix 35
AD8
B
489 493Right-handed 310
Helix 36
AD9
B
499 515Right-handed alpha
Helix 37
AE1
B
525 529Right-handed 310
Helix 38
AE2
B
564 575Right-handed alpha
Helix 39
AE3
B
578 581Right-handed 310
Helix 40
AE4
B
582 588Right-handed alpha
Helix 41
AE5
B
603 612Right-handed alpha
Helix 42
AE6
B
615 619Right-handed 310
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There are 8 sheets in PDB entry 9M5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
261 271parallel
Strand 3
A
210 217parallel
Strand 4
A
200 207anti-parallel
Strand 5
A
185 197anti-parallel
Strand 6
A
138 139parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
261 271parallel
Strand 3
A
239 247anti-parallel
Strand 4
A
185 197anti-parallel
Strand 5
A
138 139parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
387 395parallel
Strand 3
A
408 417anti-parallel
Strand 4
A
596 602anti-parallel
Strand 5
A
553 560anti-parallel
Strand 6
A
545 550anti-parallel
Strand 7
A
518 522anti-parallel
Strand 8
A
470 472parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 347first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
359 362anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
261 271parallel
Strand 3
B
210 217parallel
Strand 4
B
200 207anti-parallel
Strand 5
B
185 197anti-parallel
Strand 6
B
138 139parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
261 271parallel
Strand 3
B
239 247anti-parallel
Strand 4
B
185 197anti-parallel
Strand 5
B
138 139parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
387 395parallel
Strand 3
B
408 417anti-parallel
Strand 4
B
596 602anti-parallel
Strand 5
B
553 560anti-parallel
Strand 6
B
545 550anti-parallel
Strand 7
B
518 522anti-parallel
Strand 8
B
470 472parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 347first strand
Strand 2
B
365 369anti-parallel
Strand 3
B
359 362anti-parallel
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