Analysis of interatomic Contacts of Structural Units in PDB entry:
9M66

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M66 entry

There are 7 chains in PDB entry 9M66 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	LYS 269
B	THR 2	LYS 269
C	THR 2	LYS 269
D	THR 2	LYS 269
E	THR 2	LYS 269
F	THR 2	LYS 269
G	THR 2	LYS 269

There are 39 helices in PDB entry 9M66. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	96	Right-handed alpha
Helix 2	AA2	A	100	126	Right-handed alpha
Helix 3	AA3	A	137	146	Right-handed alpha
Helix 4	AA4	A	161	172	Right-handed alpha
Helix 5	AA5	A	258	260	Right-handed 310
Helix 6	AA6	B	91	96	Right-handed alpha
Helix 7	AA7	B	100	126	Right-handed alpha
Helix 8	AA8	B	137	146	Right-handed alpha
Helix 9	AA9	B	161	176	Right-handed alpha
Helix 10	AB1	B	180	190	Right-handed alpha
Helix 11	AB2	C	91	96	Right-handed alpha
Helix 12	AB3	C	100	126	Right-handed alpha
Helix 13	AB4	C	137	146	Right-handed alpha
Helix 14	AB5	C	161	176	Right-handed alpha
Helix 15	AB6	C	180	190	Right-handed alpha
Helix 16	AB7	D	28	30	Right-handed 310
Helix 17	AB8	D	91	96	Right-handed alpha
Helix 18	AB9	D	100	126	Right-handed alpha
Helix 19	AC1	D	137	146	Right-handed alpha
Helix 20	AC2	D	161	176	Right-handed alpha
Helix 21	AC3	D	180	190	Right-handed alpha
Helix 22	AC4	E	91	96	Right-handed alpha
Helix 23	AC5	E	100	127	Right-handed alpha
Helix 24	AC6	E	137	146	Right-handed alpha
Helix 25	AC7	E	161	176	Right-handed alpha
Helix 26	AC8	E	180	190	Right-handed alpha
Helix 27	AC9	E	258	260	Right-handed 310
Helix 28	AD1	F	28	30	Right-handed 310
Helix 29	AD2	F	91	96	Right-handed alpha
Helix 30	AD3	F	100	126	Right-handed alpha
Helix 31	AD4	F	137	149	Right-handed alpha
Helix 32	AD5	F	161	176	Right-handed alpha
Helix 33	AD6	F	180	190	Right-handed alpha
Helix 34	AD7	F	258	260	Right-handed 310
Helix 35	AD8	G	91	96	Right-handed alpha
Helix 36	AD9	G	100	126	Right-handed alpha
Helix 37	AE1	G	137	146	Right-handed alpha
Helix 38	AE2	G	161	176	Right-handed alpha
Helix 39	AE3	G	180	190	Right-handed alpha

There are 29 sheets in PDB entry 9M66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	223	238	parallel
Strand 3	A	243	256	anti-parallel
Strand 4	A	81	90	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	77	79	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	73	74	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	262	267	parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	156	160	anti-parallel
Strand 5	A	198	202	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	224	238	parallel
Strand 3	B	243	255	anti-parallel
Strand 4	B	81	90	anti-parallel
Strand 5	C	58	59	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	45	47	anti-parallel
Strand 3	G	13	14	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	73	74	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	G	81	90	anti-parallel
Strand 3	G	243	255	anti-parallel
Strand 4	G	224	227	anti-parallel
Strand 5	G	33	35	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	G	81	90	anti-parallel
Strand 3	G	243	255	anti-parallel
Strand 4	G	232	238	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	262	267	parallel
Strand 3	B	210	216	anti-parallel
Strand 4	B	155	160	anti-parallel
Strand 5	B	198	202	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	D	45	47	parallel
Strand 3	D	77	79	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	224	238	parallel
Strand 3	C	243	255	anti-parallel
Strand 4	C	81	90	anti-parallel
Strand 5	D	58	59	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	77	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	73	74	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	262	268	parallel
Strand 3	C	210	216	anti-parallel
Strand 4	C	155	160	anti-parallel
Strand 5	C	198	202	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	E	45	47	parallel
Strand 3	E	77	79	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	223	238	parallel
Strand 3	D	243	256	anti-parallel
Strand 4	D	81	90	anti-parallel
Strand 5	E	58	59	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	223	238	parallel
Strand 3	D	243	256	anti-parallel
Strand 4	D	81	90	anti-parallel
Strand 5	E	68	69	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	73	74	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	134	first strand
Strand 2	D	262	267	parallel
Strand 3	D	210	215	anti-parallel
Strand 4	D	156	160	anti-parallel
Strand 5	D	198	202	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	F	45	47	parallel
Strand 3	F	77	79	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	223	238	parallel
Strand 3	E	243	256	anti-parallel
Strand 4	E	81	90	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	51	first strand
Strand 2	E	73	74	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	134	first strand
Strand 2	E	262	267	parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	155	160	anti-parallel
Strand 5	E	198	202	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	G	45	47	parallel
Strand 3	G	77	79	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	35	first strand
Strand 2	F	223	238	parallel
Strand 3	F	243	255	anti-parallel
Strand 4	F	81	90	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	51	first strand
Strand 2	F	73	74	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	134	first strand
Strand 2	F	262	267	parallel
Strand 3	F	210	216	anti-parallel
Strand 4	F	155	160	anti-parallel
Strand 5	F	198	202	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	134	first strand
Strand 2	G	262	267	parallel
Strand 3	G	210	215	anti-parallel
Strand 4	G	156	160	anti-parallel
Strand 5	G	198	202	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M66

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M66