Analysis of interatomic Contacts of Structural Units in PDB entry:
9M68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M68 entry

There are 10 chains in PDB entry 9M68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	VAL 433
F	VAL 51	LEU 273
B	LEU 19	VAL 433
C	VAL 51	LEU 273
D	LEU 19	VAL 433
E	VAL 51	LEU 273
G	LEU 19	VAL 433
H	VAL 51	LEU 273
I	LEU 19	VAL 433
J	VAL 51	LEU 273

There are 80 helices in PDB entry 9M68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	66	Right-handed alpha
Helix 2	AA2	A	67	70	Right-handed 310
Helix 3	AA3	A	152	163	Right-handed alpha
Helix 4	AA4	A	201	207	Right-handed alpha
Helix 5	AA5	A	269	294	Right-handed alpha
Helix 6	AA6	A	315	330	Right-handed alpha
Helix 7	AA7	A	358	369	Right-handed alpha
Helix 8	AA8	A	369	378	Right-handed alpha
Helix 9	AA9	A	385	400	Right-handed alpha
Helix 10	AB1	A	402	433	Right-handed alpha
Helix 11	AB2	F	52	98	Right-handed alpha
Helix 12	AB3	F	103	126	Right-handed alpha
Helix 13	AB4	F	134	138	Right-handed 310
Helix 14	AB5	F	199	213	Right-handed alpha
Helix 15	AB6	F	218	255	Right-handed alpha
Helix 16	AB7	F	255	273	Right-handed alpha
Helix 17	AB8	B	20	66	Right-handed alpha
Helix 18	AB9	B	67	70	Right-handed 310
Helix 19	AC1	B	152	163	Right-handed alpha
Helix 20	AC2	B	201	207	Right-handed alpha
Helix 21	AC3	B	269	294	Right-handed alpha
Helix 22	AC4	B	315	330	Right-handed alpha
Helix 23	AC5	B	340	345	Right-handed alpha
Helix 24	AC6	B	358	369	Right-handed alpha
Helix 25	AC7	B	369	378	Right-handed alpha
Helix 26	AC8	B	385	400	Right-handed alpha
Helix 27	AC9	B	402	433	Right-handed alpha
Helix 28	AD1	C	52	98	Right-handed alpha
Helix 29	AD2	C	103	126	Right-handed alpha
Helix 30	AD3	C	175	181	Right-handed alpha
Helix 31	AD4	C	199	213	Right-handed alpha
Helix 32	AD5	C	218	253	Right-handed alpha
Helix 33	AD6	C	255	273	Right-handed alpha
Helix 34	AD7	D	20	65	Right-handed alpha
Helix 35	AD8	D	66	70	Right-handed 310
Helix 36	AD9	D	152	163	Right-handed alpha
Helix 37	AE1	D	201	207	Right-handed alpha
Helix 38	AE2	D	269	294	Right-handed alpha
Helix 39	AE3	D	315	330	Right-handed alpha
Helix 40	AE4	D	358	369	Right-handed alpha
Helix 41	AE5	D	369	378	Right-handed alpha
Helix 42	AE6	D	385	400	Right-handed alpha
Helix 43	AE7	D	402	433	Right-handed alpha
Helix 44	AE8	E	52	98	Right-handed alpha
Helix 45	AE9	E	103	126	Right-handed alpha
Helix 46	AF1	E	134	138	Right-handed 310
Helix 47	AF2	E	199	213	Right-handed alpha
Helix 48	AF3	E	218	255	Right-handed alpha
Helix 49	AF4	E	255	273	Right-handed alpha
Helix 50	AF5	G	20	65	Right-handed alpha
Helix 51	AF6	G	66	70	Right-handed 310
Helix 52	AF7	G	152	163	Right-handed alpha
Helix 53	AF8	G	201	207	Right-handed alpha
Helix 54	AF9	G	269	294	Right-handed alpha
Helix 55	AG1	G	315	330	Right-handed alpha
Helix 56	AG2	G	358	369	Right-handed alpha
Helix 57	AG3	G	369	378	Right-handed alpha
Helix 58	AG4	G	385	400	Right-handed alpha
Helix 59	AG5	G	402	433	Right-handed alpha
Helix 60	AG6	H	52	98	Right-handed alpha
Helix 61	AG7	H	103	126	Right-handed alpha
Helix 62	AG8	H	175	181	Right-handed alpha
Helix 63	AG9	H	200	213	Right-handed alpha
Helix 64	AH1	H	218	255	Right-handed alpha
Helix 65	AH2	H	255	273	Right-handed alpha
Helix 66	AH3	I	20	66	Right-handed alpha
Helix 67	AH4	I	147	151	Right-handed 310
Helix 68	AH5	I	152	163	Right-handed alpha
Helix 69	AH6	I	201	207	Right-handed alpha
Helix 70	AH7	I	269	294	Right-handed alpha
Helix 71	AH8	I	315	330	Right-handed alpha
Helix 72	AH9	I	358	369	Right-handed alpha
Helix 73	AI1	I	369	378	Right-handed alpha
Helix 74	AI2	I	385	400	Right-handed alpha
Helix 75	AI3	I	402	433	Right-handed alpha
Helix 76	AI4	J	52	98	Right-handed alpha
Helix 77	AI5	J	103	126	Right-handed alpha
Helix 78	AI6	J	200	213	Right-handed alpha
Helix 79	AI7	J	218	255	Right-handed alpha
Helix 80	AI8	J	255	273	Right-handed alpha

There are 29 sheets in PDB entry 9M68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	258	267	anti-parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	227	231	anti-parallel
Strand 5	A	234	238	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	250	253	anti-parallel
Strand 3	A	242	243	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	175	first strand
Strand 2	A	178	187	anti-parallel
Strand 3	A	105	109	anti-parallel
Strand 4	A	219	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	129	134	anti-parallel
Strand 3	A	194	198	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	215	216	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	355	357	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	93	99	anti-parallel
Strand 4	B	227	231	anti-parallel
Strand 5	B	234	238	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	250	253	anti-parallel
Strand 3	B	242	243	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	175	first strand
Strand 2	B	178	187	anti-parallel
Strand 3	B	105	109	anti-parallel
Strand 4	B	219	222	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	129	134	anti-parallel
Strand 3	B	194	198	anti-parallel
Strand 4	B	209	210	anti-parallel
Strand 5	B	215	216	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	355	357	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	258	267	anti-parallel
Strand 3	D	93	99	anti-parallel
Strand 4	D	227	231	anti-parallel
Strand 5	D	234	238	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	250	253	anti-parallel
Strand 3	D	242	243	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	175	first strand
Strand 2	D	178	187	anti-parallel
Strand 3	D	105	109	anti-parallel
Strand 4	D	219	222	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	146	first strand
Strand 2	D	129	134	anti-parallel
Strand 3	D	194	198	anti-parallel
Strand 4	D	209	210	anti-parallel
Strand 5	D	215	216	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	355	357	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	162	first strand
Strand 2	E	170	171	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	77	first strand
Strand 2	G	258	267	anti-parallel
Strand 3	G	93	99	anti-parallel
Strand 4	G	227	231	anti-parallel
Strand 5	G	234	238	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	86	first strand
Strand 2	G	250	253	anti-parallel
Strand 3	G	242	243	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	175	first strand
Strand 2	G	178	187	anti-parallel
Strand 3	G	105	109	anti-parallel
Strand 4	G	219	222	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	146	first strand
Strand 2	G	129	134	anti-parallel
Strand 3	G	194	198	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	210	first strand
Strand 2	G	215	216	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	348	first strand
Strand 2	G	355	357	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	77	first strand
Strand 2	I	258	267	anti-parallel
Strand 3	I	93	99	anti-parallel
Strand 4	I	227	231	anti-parallel
Strand 5	I	234	238	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	83	86	first strand
Strand 2	I	250	253	anti-parallel
Strand 3	I	242	243	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	168	172	first strand
Strand 2	I	180	187	anti-parallel
Strand 3	I	105	109	anti-parallel
Strand 4	I	219	222	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	142	146	first strand
Strand 2	I	129	134	anti-parallel
Strand 3	I	194	198	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	209	210	first strand
Strand 2	I	215	216	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	347	348	first strand
Strand 2	I	355	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M68

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M68