Analysis of interatomic Contacts of Structural Units in PDB entry:
9M6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M6F entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 9M6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 249
A
 HIS 251LEU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9M6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 49Right-handed alpha
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
76 88Right-handed alpha
Helix 5
AA5
A
102 115Right-handed alpha
Helix 6
AA6
A
116 119Right-handed 310
Helix 7
AA7
A
133 139Right-handed alpha
Helix 8
AA8
A
145 155Right-handed alpha
Helix 9
AA9
A
157 163Right-handed alpha
Helix 10
AB1
A
166 172Right-handed alpha
Helix 11
AB2
A
173 189Right-handed alpha
Helix 12
AB3
A
194 199Right-handed alpha
Helix 13
AB4
A
202 207Right-handed alpha
Helix 14
AB5
A
220 223Right-handed 310
Helix 15
AB6
A
224 234Right-handed alpha
Helix 16
AB7
A
246 251Right-handed alpha
Helix 17
AB8
A
251 264Right-handed alpha
Helix 18
AB9
A
265 267Right-handed 310
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There are 3 sheets in PDB entry 9M6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
6 8anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
52 56anti-parallel
Strand 4
A
25 29parallel
Strand 5
A
97 100parallel
Strand 6
A
122 124parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
238 241parallel
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