Analysis of interatomic Contacts of Structural Units in PDB entry:
9M6I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M6I entry

There are 5 chains in PDB entry 9M6I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 39	ALA 413
B	ALA 39	ALA 413
C	ALA 39	ALA 413
D	ALA 39	ALA 413
E	ALA 39	ALA 413

There are 56 helices in PDB entry 9M6I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	66	Right-handed alpha
Helix 2	AA2	A	67	70	Right-handed 310
Helix 3	AA3	A	152	164	Right-handed alpha
Helix 4	AA4	A	189	192	Right-handed 310
Helix 5	AA5	A	201	208	Right-handed alpha
Helix 6	AA6	A	269	294	Right-handed alpha
Helix 7	AA7	A	315	330	Right-handed alpha
Helix 8	AA8	A	340	345	Right-handed alpha
Helix 9	AA9	A	358	369	Right-handed alpha
Helix 10	AB1	A	369	378	Right-handed alpha
Helix 11	AB2	A	385	399	Right-handed alpha
Helix 12	AB3	A	402	413	Right-handed alpha
Helix 13	AB4	B	40	66	Right-handed alpha
Helix 14	AB5	B	152	164	Right-handed alpha
Helix 15	AB6	B	189	192	Right-handed 310
Helix 16	AB7	B	201	208	Right-handed alpha
Helix 17	AB8	B	269	294	Right-handed alpha
Helix 18	AB9	B	315	330	Right-handed alpha
Helix 19	AC1	B	358	369	Right-handed alpha
Helix 20	AC2	B	369	378	Right-handed alpha
Helix 21	AC3	B	385	399	Right-handed alpha
Helix 22	AC4	B	402	413	Right-handed alpha
Helix 23	AC5	C	40	66	Right-handed alpha
Helix 24	AC6	C	67	70	Right-handed 310
Helix 25	AC7	C	152	164	Right-handed alpha
Helix 26	AC8	C	189	192	Right-handed 310
Helix 27	AC9	C	201	208	Right-handed alpha
Helix 28	AD1	C	269	294	Right-handed alpha
Helix 29	AD2	C	315	330	Right-handed alpha
Helix 30	AD3	C	340	345	Right-handed alpha
Helix 31	AD4	C	358	369	Right-handed alpha
Helix 32	AD5	C	369	378	Right-handed alpha
Helix 33	AD6	C	385	399	Right-handed alpha
Helix 34	AD7	C	402	413	Right-handed alpha
Helix 35	AD8	D	40	66	Right-handed alpha
Helix 36	AD9	D	67	70	Right-handed 310
Helix 37	AE1	D	152	164	Right-handed alpha
Helix 38	AE2	D	189	192	Right-handed 310
Helix 39	AE3	D	201	208	Right-handed alpha
Helix 40	AE4	D	269	294	Right-handed alpha
Helix 41	AE5	D	315	330	Right-handed alpha
Helix 42	AE6	D	340	345	Right-handed alpha
Helix 43	AE7	D	358	369	Right-handed alpha
Helix 44	AE8	D	369	378	Right-handed alpha
Helix 45	AE9	D	385	399	Right-handed alpha
Helix 46	AF1	D	402	413	Right-handed alpha
Helix 47	AF2	E	40	66	Right-handed alpha
Helix 48	AF3	E	152	164	Right-handed alpha
Helix 49	AF4	E	189	192	Right-handed 310
Helix 50	AF5	E	201	208	Right-handed alpha
Helix 51	AF6	E	269	294	Right-handed alpha
Helix 52	AF7	E	315	330	Right-handed alpha
Helix 53	AF8	E	358	369	Right-handed alpha
Helix 54	AF9	E	369	378	Right-handed alpha
Helix 55	AG1	E	385	399	Right-handed alpha
Helix 56	AG2	E	402	413	Right-handed alpha

There are 30 sheets in PDB entry 9M6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	261	267	anti-parallel
Strand 3	A	93	101	anti-parallel
Strand 4	A	227	231	anti-parallel
Strand 5	A	234	238	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	86	first strand
Strand 2	A	250	254	anti-parallel
Strand 3	A	242	243	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	180	187	anti-parallel
Strand 3	A	105	109	anti-parallel
Strand 4	A	219	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	129	134	anti-parallel
Strand 3	A	194	198	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	215	216	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	355	357	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	261	267	anti-parallel
Strand 3	B	93	101	anti-parallel
Strand 4	B	227	231	anti-parallel
Strand 5	B	234	238	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	86	first strand
Strand 2	B	250	254	anti-parallel
Strand 3	B	242	243	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	172	first strand
Strand 2	B	180	187	anti-parallel
Strand 3	B	105	110	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	129	134	anti-parallel
Strand 3	B	194	198	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	215	216	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	355	357	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	77	first strand
Strand 2	C	261	267	anti-parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	227	231	anti-parallel
Strand 5	C	234	238	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	86	first strand
Strand 2	C	250	254	anti-parallel
Strand 3	C	242	243	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	172	first strand
Strand 2	C	180	187	anti-parallel
Strand 3	C	105	109	anti-parallel
Strand 4	C	219	222	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	129	134	anti-parallel
Strand 3	C	194	198	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	215	216	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	355	357	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	261	267	anti-parallel
Strand 3	D	93	101	anti-parallel
Strand 4	D	227	231	anti-parallel
Strand 5	D	234	238	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	86	first strand
Strand 2	D	250	254	anti-parallel
Strand 3	D	242	243	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	172	first strand
Strand 2	D	180	187	anti-parallel
Strand 3	D	105	110	anti-parallel
Strand 4	D	218	222	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	146	first strand
Strand 2	D	129	134	anti-parallel
Strand 3	D	194	198	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	215	216	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	355	357	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	77	first strand
Strand 2	E	261	267	anti-parallel
Strand 3	E	93	101	anti-parallel
Strand 4	E	227	231	anti-parallel
Strand 5	E	234	238	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	86	first strand
Strand 2	E	250	254	anti-parallel
Strand 3	E	242	243	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	172	first strand
Strand 2	E	180	187	anti-parallel
Strand 3	E	105	109	anti-parallel
Strand 4	E	219	222	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	194	198	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	210	first strand
Strand 2	E	215	216	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	348	first strand
Strand 2	E	355	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M6I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M6I