Analysis of interatomic Contacts of Structural Units in PDB entry:
9M76

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M76 entry

There are 12 chains in PDB entry 9M76 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 19	GLY 101
C	ARG 11	LYS 119
D	ARG 26	LYS 122
E	LYS 37	ALA 135
F	ARG 17	GLY 102
G	LYS 9	LYS 119
H	ARG 27	LYS 122
I	G -71	C -63
I	G -61	G 72
J	C -72	C 71
A	ALA 1	ARG 134
K	TRP 127	ARG 793

There are 53 helices in PDB entry 9M76. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	24	29	Right-handed 310
Helix 2	AA2	B	30	41	Right-handed alpha
Helix 3	AA3	B	49	76	Right-handed alpha
Helix 4	AA4	B	82	94	Right-handed alpha
Helix 5	AA5	C	16	22	Right-handed alpha
Helix 6	AA6	C	26	37	Right-handed alpha
Helix 7	AA7	C	45	73	Right-handed alpha
Helix 8	AA8	C	79	90	Right-handed alpha
Helix 9	AA9	C	90	97	Right-handed alpha
Helix 10	AB1	C	112	116	Right-handed 310
Helix 11	AB2	D	34	46	Right-handed alpha
Helix 12	AB3	D	52	81	Right-handed alpha
Helix 13	AB4	D	87	99	Right-handed alpha
Helix 14	AB5	D	100	122	Right-handed alpha
Helix 15	AB6	E	44	55	Right-handed alpha
Helix 16	AB7	E	63	79	Right-handed alpha
Helix 17	AB8	E	85	114	Right-handed alpha
Helix 18	AB9	E	120	131	Right-handed alpha
Helix 19	AC1	F	24	29	Right-handed 310
Helix 20	AC2	F	30	41	Right-handed alpha
Helix 21	AC3	F	49	76	Right-handed alpha
Helix 22	AC4	F	82	93	Right-handed alpha
Helix 23	AC5	G	16	22	Right-handed alpha
Helix 24	AC6	G	26	37	Right-handed alpha
Helix 25	AC7	G	45	73	Right-handed alpha
Helix 26	AC8	G	79	90	Right-handed alpha
Helix 27	AC9	G	90	97	Right-handed alpha
Helix 28	AD1	G	112	116	Right-handed 310
Helix 29	AD2	H	34	46	Right-handed alpha
Helix 30	AD3	H	52	81	Right-handed alpha
Helix 31	AD4	H	87	99	Right-handed alpha
Helix 32	AD5	H	100	120	Right-handed alpha
Helix 33	AD6	A	44	57	Right-handed alpha
Helix 34	AD7	A	63	76	Right-handed alpha
Helix 35	AD8	A	85	114	Right-handed alpha
Helix 36	AD9	A	120	131	Right-handed alpha
Helix 37	AE1	K	146	149	Right-handed 310
Helix 38	AE2	K	273	277	Right-handed 310
Helix 39	AE3	K	360	366	Right-handed alpha
Helix 40	AE4	K	366	383	Right-handed alpha
Helix 41	AE5	K	400	404	Right-handed 310
Helix 42	AE6	K	432	439	Right-handed alpha
Helix 43	AE7	K	502	510	Right-handed alpha
Helix 44	AE8	K	526	530	Right-handed 310
Helix 45	AE9	K	540	544	Right-handed 310
Helix 46	AF1	K	591	602	Right-handed alpha
Helix 47	AF2	K	610	630	Right-handed alpha
Helix 48	AF3	K	677	687	Right-handed alpha
Helix 49	AF4	K	690	700	Right-handed alpha
Helix 50	AF5	K	701	703	Right-handed 310
Helix 51	AF6	K	709	722	Right-handed alpha
Helix 52	AF7	K	745	754	Right-handed alpha
Helix 53	AF8	K	775	786	Right-handed alpha

There are 17 sheets in PDB entry 9M76. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	A	118	119	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	A	83	84	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	129	first strand
Strand 2	K	151	161	anti-parallel
Strand 3	K	182	188	anti-parallel
Strand 4	K	197	200	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	129	first strand
Strand 2	K	151	161	anti-parallel
Strand 3	K	140	144	anti-parallel
Strand 4	K	204	206	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	265	271	first strand
Strand 2	K	253	260	anti-parallel
Strand 3	K	237	248	anti-parallel
Strand 4	K	222	227	anti-parallel
Strand 5	K	278	279	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	330	332	first strand
Strand 2	K	339	341	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	449	450	first strand
Strand 2	K	459	462	anti-parallel
Strand 3	K	533	538	parallel
Strand 4	K	553	568	anti-parallel
Strand 5	K	522	523	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	470	471	first strand
Strand 2	K	475	479	anti-parallel
Strand 3	K	574	582	anti-parallel
Strand 4	K	553	568	anti-parallel
Strand 5	K	429	430	anti-parallel
Strand 6	K	605	606	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	734	736	first strand
Strand 2	K	742	744	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M76

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M76