Analysis of interatomic Contacts of Structural Units in PDB entry:
9M7A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M7A entry

There are 3 chains in PDB entry 9M7A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8SER 311
B
 LYS 8SER 311
C
 LYS 8SER 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9M7A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
38 54Right-handed alpha
Helix 3
AA3
A
67 99Right-handed alpha
Helix 4
AA4
A
110 125Right-handed alpha
Helix 5
AA5
A
125 144Right-handed alpha
Helix 6
AA6
A
149 157Right-handed alpha
Helix 7
AA7
A
157 175Right-handed alpha
Helix 8
AA8
A
179 193Right-handed alpha
Helix 9
AA9
B
10 25Right-handed alpha
Helix 10
AB1
B
38 54Right-handed alpha
Helix 11
AB2
B
67 99Right-handed alpha
Helix 12
AB3
B
110 125Right-handed alpha
Helix 13
AB4
B
125 144Right-handed alpha
Helix 14
AB5
B
149 157Right-handed alpha
Helix 15
AB6
B
157 175Right-handed alpha
Helix 16
AB7
B
179 193Right-handed alpha
Helix 17
AB8
C
10 25Right-handed alpha
Helix 18
AB9
C
38 54Right-handed alpha
Helix 19
AC1
C
67 99Right-handed alpha
Helix 20
AC2
C
110 125Right-handed alpha
Helix 21
AC3
C
125 144Right-handed alpha
Helix 22
AC4
C
149 157Right-handed alpha
Helix 23
AC5
C
157 175Right-handed alpha
Helix 24
AC6
C
179 193Right-handed alpha
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There are 9 sheets in PDB entry 9M7A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
215 216parallel
Strand 3
A
233 235parallel
Strand 4
A
268 270parallel
Strand 5
A
287 288parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
221 222parallel
Strand 3
A
256 257parallel
Strand 4
A
275 276parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
227 228parallel
Strand 3
A
262 263parallel
Strand 4
A
281 282parallel
Strand 5
A
296 300parallel
Strand 6
B
305 309anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 309first strand
Strand 2
C
296 300anti-parallel
Strand 3
C
281 282parallel
Strand 4
C
262 263parallel
Strand 5
C
227 228parallel
Strand 6
C
207 208parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 196first strand
Strand 2
B
215 216parallel
Strand 3
B
233 235parallel
Strand 4
B
268 270parallel
Strand 5
B
287 288parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
221 222parallel
Strand 3
B
256 257parallel
Strand 4
B
275 276parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
227 228parallel
Strand 3
B
262 263parallel
Strand 4
B
281 282parallel
Strand 5
B
296 300parallel
Strand 6
C
305 309anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 196first strand
Strand 2
C
215 216parallel
Strand 3
C
233 235parallel
Strand 4
C
268 270parallel
Strand 5
C
287 288parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 202first strand
Strand 2
C
221 222parallel
Strand 3
C
256 257parallel
Strand 4
C
275 276parallel
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