Analysis of interatomic Contacts of Structural Units in PDB entry:
9M7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M7F entry

There are 2 chains in PDB entry 9M7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 19SER 536
B
 SER -1SER 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9M7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 36Right-handed alpha
Helix 2
AA2
A
66 72Right-handed alpha
Helix 3
AA3
A
72 80Right-handed alpha
Helix 4
AA4
A
84 96Right-handed alpha
Helix 5
AA5
A
99 113Right-handed alpha
Helix 6
AA6
A
117 130Right-handed alpha
Helix 7
AA7
A
141 152Right-handed alpha
Helix 8
AA8
A
154 158Right-handed 310
Helix 9
AA9
A
164 168Right-handed alpha
Helix 10
AB1
A
173 185Right-handed alpha
Helix 11
AB2
A
187 189Right-handed 310
Helix 12
AB3
A
197 207Right-handed alpha
Helix 13
AB4
A
235 257Right-handed alpha
Helix 14
AB5
A
280 290Right-handed alpha
Helix 15
AB6
A
294 307Right-handed alpha
Helix 16
AB7
A
320 324Right-handed 310
Helix 17
AB8
A
331 345Right-handed alpha
Helix 18
AB9
A
349 362Right-handed alpha
Helix 19
AC1
A
382 397Right-handed alpha
Helix 20
AC2
A
401 403Right-handed 310
Helix 21
AC3
A
404 417Right-handed alpha
Helix 22
AC4
A
418 423Right-handed 310
Helix 23
AC5
A
429 444Right-handed alpha
Helix 24
AC6
A
444 461Right-handed alpha
Helix 25
AC7
A
468 482Right-handed alpha
Helix 26
AC8
A
486 495Right-handed alpha
Helix 27
AC9
A
521 535Right-handed alpha
Helix 28
AD1
B
26 36Right-handed alpha
Helix 29
AD2
B
65 72Right-handed alpha
Helix 30
AD3
B
72 80Right-handed alpha
Helix 31
AD4
B
84 96Right-handed alpha
Helix 32
AD5
B
99 113Right-handed alpha
Helix 33
AD6
B
117 130Right-handed alpha
Helix 34
AD7
B
141 152Right-handed alpha
Helix 35
AD8
B
154 158Right-handed 310
Helix 36
AD9
B
164 168Right-handed alpha
Helix 37
AE1
B
173 184Right-handed alpha
Helix 38
AE2
B
187 189Right-handed 310
Helix 39
AE3
B
197 206Right-handed alpha
Helix 40
AE4
B
235 257Right-handed alpha
Helix 41
AE5
B
280 290Right-handed alpha
Helix 42
AE6
B
294 308Right-handed alpha
Helix 43
AE7
B
320 324Right-handed 310
Helix 44
AE8
B
331 345Right-handed alpha
Helix 45
AE9
B
349 362Right-handed alpha
Helix 46
AF1
B
382 397Right-handed alpha
Helix 47
AF2
B
401 403Right-handed 310
Helix 48
AF3
B
404 417Right-handed alpha
Helix 49
AF4
B
418 423Right-handed 310
Helix 50
AF5
B
429 444Right-handed alpha
Helix 51
AF6
B
445 447Right-handed 310
Helix 52
AF7
B
448 463Right-handed alpha
Helix 53
AF8
B
468 482Right-handed alpha
Helix 54
AF9
B
486 496Right-handed alpha
Helix 55
AG1
B
520 535Right-handed alpha
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There are 6 sheets in PDB entry 9M7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
191 195parallel
Strand 5
A
39 42parallel
Strand 6
A
133 138parallel
Strand 7
A
160 163parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
114 116anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
263 265anti-parallel
Strand 3
A
516 520anti-parallel
Strand 4
A
506 511anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
219 222anti-parallel
Strand 3
B
210 214anti-parallel
Strand 4
B
191 195parallel
Strand 5
B
39 42parallel
Strand 6
B
133 138parallel
Strand 7
B
160 163parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
115 116anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
263 265anti-parallel
Strand 3
B
516 519anti-parallel
Strand 4
B
507 511anti-parallel
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