Analysis of interatomic Contacts of Structural Units in PDB entry:
9M80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M80 entry

There are 4 chains in PDB entry 9M80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 71	LEU 594
D	ALA 71	LEU 594
A	ASP 77	PRO 978
B	ASP 77	PRO 978

There are144 helices in PDB entry 9M80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	103	107	Right-handed 310
Helix 2	AA2	C	117	130	Right-handed alpha
Helix 3	AA3	C	152	156	Right-handed 310
Helix 4	AA4	C	163	167	Right-handed 310
Helix 5	AA5	C	168	175	Right-handed alpha
Helix 6	AA6	C	179	183	Right-handed 310
Helix 7	AA7	C	193	215	Right-handed alpha
Helix 8	AA8	C	217	227	Right-handed alpha
Helix 9	AA9	C	235	250	Right-handed alpha
Helix 10	AB1	C	253	257	Right-handed 310
Helix 11	AB2	C	258	263	Right-handed alpha
Helix 12	AB3	C	265	276	Right-handed alpha
Helix 13	AB4	C	277	304	Right-handed alpha
Helix 14	AB5	C	320	326	Right-handed alpha
Helix 15	AB6	C	327	330	Right-handed 310
Helix 16	AB7	C	362	370	Right-handed alpha
Helix 17	AB8	C	371	385	Right-handed alpha
Helix 18	AB9	C	392	396	Right-handed 310
Helix 19	AC1	C	419	430	Right-handed alpha
Helix 20	AC2	C	444	454	Right-handed alpha
Helix 21	AC3	C	463	465	Right-handed 310
Helix 22	AC4	C	475	479	Right-handed 310
Helix 23	AC5	C	494	499	Right-handed alpha
Helix 24	AC6	C	503	514	Right-handed alpha
Helix 25	AC7	C	515	519	Right-handed 310
Helix 26	AC8	C	521	532	Right-handed alpha
Helix 27	AC9	C	542	546	Right-handed alpha
Helix 28	AD1	C	549	553	Right-handed 310
Helix 29	AD2	C	577	591	Right-handed alpha
Helix 30	AD3	D	103	107	Right-handed 310
Helix 31	AD4	D	117	131	Right-handed alpha
Helix 32	AD5	D	152	156	Right-handed 310
Helix 33	AD6	D	163	167	Right-handed 310
Helix 34	AD7	D	169	174	Right-handed alpha
Helix 35	AD8	D	175	177	Right-handed 310
Helix 36	AD9	D	179	183	Right-handed 310
Helix 37	AE1	D	193	215	Right-handed alpha
Helix 38	AE2	D	217	228	Right-handed alpha
Helix 39	AE3	D	229	234	Right-handed alpha
Helix 40	AE4	D	235	249	Right-handed alpha
Helix 41	AE5	D	253	257	Right-handed 310
Helix 42	AE6	D	258	263	Right-handed alpha
Helix 43	AE7	D	265	276	Right-handed alpha
Helix 44	AE8	D	276	304	Right-handed alpha
Helix 45	AE9	D	320	326	Right-handed alpha
Helix 46	AF1	D	327	330	Right-handed 310
Helix 47	AF2	D	362	370	Right-handed alpha
Helix 48	AF3	D	371	385	Right-handed alpha
Helix 49	AF4	D	392	396	Right-handed 310
Helix 50	AF5	D	419	430	Right-handed alpha
Helix 51	AF6	D	444	454	Right-handed alpha
Helix 52	AF7	D	475	479	Right-handed 310
Helix 53	AF8	D	494	501	Right-handed alpha
Helix 54	AF9	D	503	514	Right-handed alpha
Helix 55	AG1	D	515	519	Right-handed 310
Helix 56	AG2	D	521	532	Right-handed alpha
Helix 57	AG3	D	542	546	Right-handed alpha
Helix 58	AG4	D	549	553	Right-handed 310
Helix 59	AG5	D	577	591	Right-handed alpha
Helix 60	AG6	A	78	92	Right-handed alpha
Helix 61	AG7	A	101	132	Right-handed alpha
Helix 62	AG8	A	148	156	Right-handed alpha
Helix 63	AG9	A	158	169	Right-handed alpha
Helix 64	AH1	A	172	178	Right-handed alpha
Helix 65	AH2	A	188	204	Right-handed alpha
Helix 66	AH3	A	304	308	Right-handed 310
Helix 67	AH4	A	309	315	Right-handed alpha
Helix 68	AH5	A	317	322	Right-handed alpha
Helix 69	AH6	A	322	330	Right-handed alpha
Helix 70	AH7	A	331	333	Right-handed 310
Helix 71	AH8	A	341	372	Right-handed alpha
Helix 72	AH9	A	376	378	Right-handed 310
Helix 73	AI1	A	379	383	Right-handed alpha
Helix 74	AI2	A	391	394	Right-handed 310
Helix 75	AI3	A	395	407	Right-handed alpha
Helix 76	AI4	A	411	422	Right-handed alpha
Helix 77	AI5	A	431	435	Right-handed 310
Helix 78	AI6	A	440	447	Right-handed alpha
Helix 79	AI7	A	447	470	Right-handed alpha
Helix 80	AI8	A	474	485	Right-handed alpha
Helix 81	AI9	A	580	588	Right-handed alpha
Helix 82	AJ1	A	595	605	Right-handed alpha
Helix 83	AJ2	A	607	614	Right-handed alpha
Helix 84	AJ3	A	626	631	Right-handed alpha
Helix 85	AJ4	A	635	647	Right-handed alpha
Helix 86	AJ5	A	649	653	Right-handed 310
Helix 87	AJ6	A	654	662	Right-handed 310
Helix 88	AJ7	A	667	694	Right-handed alpha
Helix 89	AJ8	A	715	733	Right-handed alpha
Helix 90	AJ9	A	734	742	Right-handed alpha
Helix 91	AK1	A	757	776	Right-handed alpha
Helix 92	AK2	A	780	782	Right-handed 310
Helix 93	AK3	A	793	801	Right-handed alpha
Helix 94	AK4	A	802	804	Right-handed 310
Helix 95	AK5	A	819	828	Right-handed alpha
Helix 96	AK6	A	839	848	Right-handed alpha
Helix 97	AK7	A	849	852	Right-handed 310
Helix 98	AK8	A	860	871	Right-handed alpha
Helix 99	AK9	A	877	889	Right-handed alpha
Helix 100	AL1	A	897	902	Right-handed alpha
Helix 101	AL2	A	921	938	Right-handed alpha
Helix 102	AL3	A	938	952	Right-handed alpha
Helix 103	AL4	A	957	969	Right-handed alpha
Helix 104	AL5	B	78	91	Right-handed alpha
Helix 105	AL6	B	101	132	Right-handed alpha
Helix 106	AL7	B	148	156	Right-handed alpha
Helix 107	AL8	B	158	169	Right-handed alpha
Helix 108	AL9	B	172	178	Right-handed alpha
Helix 109	AM1	B	188	204	Right-handed alpha
Helix 110	AM2	B	304	308	Right-handed 310
Helix 111	AM3	B	309	315	Right-handed alpha
Helix 112	AM4	B	317	322	Right-handed alpha
Helix 113	AM5	B	322	330	Right-handed alpha
Helix 114	AM6	B	331	333	Right-handed 310
Helix 115	AM7	B	341	372	Right-handed alpha
Helix 116	AM8	B	376	380	Right-handed 310
Helix 117	AM9	B	395	407	Right-handed alpha
Helix 118	AN1	B	411	422	Right-handed alpha
Helix 119	AN2	B	431	435	Right-handed 310
Helix 120	AN3	B	440	447	Right-handed alpha
Helix 121	AN4	B	447	470	Right-handed alpha
Helix 122	AN5	B	473	485	Right-handed alpha
Helix 123	AN6	B	580	588	Right-handed alpha
Helix 124	AN7	B	595	605	Right-handed alpha
Helix 125	AN8	B	607	614	Right-handed alpha
Helix 126	AN9	B	626	631	Right-handed alpha
Helix 127	AO1	B	635	647	Right-handed alpha
Helix 128	AO2	B	648	652	Right-handed 310
Helix 129	AO3	B	654	665	Right-handed 310
Helix 130	AO4	B	667	694	Right-handed alpha
Helix 131	AO5	B	715	732	Right-handed alpha
Helix 132	AO6	B	734	742	Right-handed alpha
Helix 133	AO7	B	757	776	Right-handed alpha
Helix 134	AO8	B	793	804	Right-handed alpha
Helix 135	AO9	B	819	828	Right-handed alpha
Helix 136	AP1	B	839	848	Right-handed alpha
Helix 137	AP2	B	849	852	Right-handed 310
Helix 138	AP3	B	858	860	Right-handed 310
Helix 139	AP4	B	861	871	Right-handed alpha
Helix 140	AP5	B	877	889	Right-handed alpha
Helix 141	AP6	B	897	903	Right-handed alpha
Helix 142	AP7	B	917	938	Right-handed alpha
Helix 143	AP8	B	938	952	Right-handed alpha
Helix 144	AP9	B	957	969	Right-handed alpha

There are 14 sheets in PDB entry 9M80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	437	first strand
Strand 2	C	387	391	parallel
Strand 3	C	307	313	parallel
Strand 4	C	134	136	parallel
Strand 5	C	97	101	parallel
Strand 6	C	537	541	parallel
Strand 7	C	483	486	parallel
Strand 8	C	458	461	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	359	first strand
Strand 2	C	340	344	anti-parallel
Strand 3	C	398	403	anti-parallel
Strand 4	C	413	416	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	387	391	parallel
Strand 3	D	307	313	parallel
Strand 4	D	134	136	parallel
Strand 5	D	97	101	parallel
Strand 6	D	537	541	parallel
Strand 7	D	483	486	parallel
Strand 8	D	458	461	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	340	344	anti-parallel
Strand 3	D	398	403	anti-parallel
Strand 4	D	413	416	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	255	first strand
Strand 2	A	275	285	anti-parallel
Strand 3	A	294	302	anti-parallel
Strand 4	A	208	213	parallel
Strand 5	A	135	140	parallel
Strand 6	A	384	389	parallel
Strand 7	A	423	426	parallel
Strand 8	A	591	593	parallel
Strand 9	A	618	620	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	225	first strand
Strand 2	A	228	232	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	268	271	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	577	579	anti-parallel
Strand 3	A	487	488	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	788	first strand
Strand 2	A	745	750	parallel
Strand 3	A	702	707	parallel
Strand 4	A	806	809	parallel
Strand 5	A	831	834	parallel
Strand 6	A	853	854	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	256	first strand
Strand 2	B	274	285	anti-parallel
Strand 3	B	294	302	anti-parallel
Strand 4	B	208	213	parallel
Strand 5	B	135	139	parallel
Strand 6	B	384	389	parallel
Strand 7	B	423	426	parallel
Strand 8	B	591	593	parallel
Strand 9	B	618	620	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	225	first strand
Strand 2	B	228	232	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	268	271	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	577	579	anti-parallel
Strand 3	B	487	488	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	788	first strand
Strand 2	B	745	750	parallel
Strand 3	B	702	707	parallel
Strand 4	B	806	809	parallel
Strand 5	B	831	834	parallel
Strand 6	B	853	854	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M80

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M80