Analysis of interatomic Contacts of Structural Units in PDB entry:
9M84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M84 entry

There are 7 chains in PDB entry 9M84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ILE 227
B	ALA 4	ASP 233
C	ALA 16	GLU 1131
D	PHE 7	ASN 1252
F	THR 12	LEU 124
G	C 1	T 31
H	A 18	G 48

There are 87 helices in PDB entry 9M84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	149	153	Right-handed 310
Helix 5	AA5	A	203	225	Right-handed alpha
Helix 6	AA6	B	29	45	Right-handed alpha
Helix 7	AA7	B	72	81	Right-handed alpha
Helix 8	AA8	B	203	224	Right-handed alpha
Helix 9	AA9	C	38	50	Right-handed alpha
Helix 10	AB1	C	51	65	Right-handed alpha
Helix 11	AB2	C	72	81	Right-handed alpha
Helix 12	AB3	C	106	113	Right-handed alpha
Helix 13	AB4	C	222	229	Right-handed alpha
Helix 14	AB5	C	232	240	Right-handed alpha
Helix 15	AB6	C	243	253	Right-handed alpha
Helix 16	AB7	C	257	270	Right-handed alpha
Helix 17	AB8	C	276	288	Right-handed alpha
Helix 18	AB9	C	297	309	Right-handed alpha
Helix 19	AC1	C	320	337	Right-handed alpha
Helix 20	AC2	C	366	393	Right-handed alpha
Helix 21	AC3	C	399	404	Right-handed alpha
Helix 22	AC4	C	406	420	Right-handed alpha
Helix 23	AC5	C	430	438	Right-handed alpha
Helix 24	AC6	C	518	524	Right-handed alpha
Helix 25	AC7	C	587	597	Right-handed alpha
Helix 26	AC8	C	617	623	Right-handed alpha
Helix 27	AC9	C	725	730	Right-handed alpha
Helix 28	AD1	C	801	812	Right-handed alpha
Helix 29	AD2	C	906	911	Right-handed alpha
Helix 30	AD3	C	916	928	Right-handed alpha
Helix 31	AD4	C	937	947	Right-handed alpha
Helix 32	AD5	C	966	976	Right-handed alpha
Helix 33	AD6	C	1055	1064	Right-handed alpha
Helix 34	AD7	C	1066	1076	Right-handed alpha
Helix 35	AD8	C	1081	1094	Right-handed alpha
Helix 36	AD9	C	1103	1116	Right-handed alpha
Helix 37	AE1	D	16	24	Right-handed alpha
Helix 38	AE2	D	85	90	Right-handed 310
Helix 39	AE3	D	110	114	Right-handed 310
Helix 40	AE4	D	121	130	Right-handed alpha
Helix 41	AE5	D	140	188	Right-handed alpha
Helix 42	AE6	D	192	228	Right-handed alpha
Helix 43	AE7	D	238	248	Right-handed alpha
Helix 44	AE8	D	257	268	Right-handed alpha
Helix 45	AE9	D	270	283	Right-handed alpha
Helix 46	AF1	D	286	305	Right-handed alpha
Helix 47	AF2	D	308	311	Right-handed 310
Helix 48	AF3	D	321	325	Right-handed 310
Helix 49	AF4	D	338	359	Right-handed alpha
Helix 50	AF5	D	363	383	Right-handed alpha
Helix 51	AF6	D	412	417	Right-handed alpha
Helix 52	AF7	D	444	452	Right-handed alpha
Helix 53	AF8	D	452	463	Right-handed alpha
Helix 54	AF9	D	468	479	Right-handed alpha
Helix 55	AG1	D	480	491	Right-handed alpha
Helix 56	AG2	D	548	558	Right-handed alpha
Helix 57	AG3	D	579	589	Right-handed alpha
Helix 58	AG4	D	606	616	Right-handed alpha
Helix 59	AG5	D	663	670	Right-handed alpha
Helix 60	AG6	D	684	699	Right-handed alpha
Helix 61	AG7	D	700	721	Right-handed alpha
Helix 62	AG8	D	734	758	Right-handed alpha
Helix 63	AG9	D	761	788	Right-handed alpha
Helix 64	AH1	D	792	800	Right-handed alpha
Helix 65	AH2	D	805	814	Right-handed alpha
Helix 66	AH3	D	821	825	Right-handed 310
Helix 67	AH4	D	840	876	Right-handed alpha
Helix 68	AH5	D	910	915	Right-handed alpha
Helix 69	AH6	D	940	950	Right-handed alpha
Helix 70	AH7	D	969	974	Right-handed alpha
Helix 71	AH8	D	988	999	Right-handed alpha
Helix 72	AH9	D	1000	1004	Right-handed 310
Helix 73	AI1	D	1022	1031	Right-handed alpha
Helix 74	AI2	D	1100	1108	Right-handed alpha
Helix 75	AI3	D	1110	1129	Right-handed alpha
Helix 76	AI4	D	1134	1145	Right-handed alpha
Helix 77	AI5	D	1166	1180	Right-handed alpha
Helix 78	AI6	D	1192	1199	Right-handed alpha
Helix 79	AI7	D	1202	1210	Right-handed alpha
Helix 80	AI8	D	1211	1223	Right-handed alpha
Helix 81	AI9	D	1230	1238	Right-handed alpha
Helix 82	AJ1	D	1247	1252	Right-handed alpha
Helix 83	AJ2	F	13	23	Right-handed alpha
Helix 84	AJ3	F	24	48	Right-handed alpha
Helix 85	AJ4	F	57	73	Right-handed alpha
Helix 86	AJ5	F	74	76	Right-handed 310
Helix 87	AJ6	F	82	103	Right-handed alpha

There are 37 sheets in PDB entry 9M84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	190	196	anti-parallel
Strand 4	A	176	180	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	135	143	anti-parallel
Strand 3	A	48	54	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	124	127	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	957	958	parallel
Strand 3	C	612	613	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	91	94	anti-parallel
Strand 3	C	126	129	anti-parallel
Strand 4	C	135	137	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	140	146	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	159	163	anti-parallel
Strand 3	C	423	424	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	441	442	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	362	363	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	180	first strand
Strand 2	C	185	193	anti-parallel
Strand 3	C	200	204	anti-parallel
Strand 4	C	211	214	anti-parallel
Strand 5	C	220	221	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	348	350	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	498	506	anti-parallel
Strand 3	C	509	517	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	498	506	anti-parallel
Strand 3	C	564	565	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	545	546	first strand
Strand 2	C	556	557	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	630	first strand
Strand 2	C	686	687	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	656	first strand
Strand 2	C	644	648	anti-parallel
Strand 3	C	634	639	anti-parallel
Strand 4	C	681	682	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	674	first strand
Strand 2	C	689	690	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	695	first strand
Strand 2	C	698	699	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	870	871	first strand
Strand 2	C	879	885	anti-parallel
Strand 3	C	721	724	parallel
Strand 4	C	901	903	anti-parallel
Strand 5	C	703	709	parallel
Strand 6	C	1008	1015	anti-parallel
Strand 7	C	992	993	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	734	746	first strand
Strand 2	C	851	864	anti-parallel
Strand 3	C	831	840	anti-parallel
Strand 4	C	781	782	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	754	755	first strand
Strand 2	C	791	793	anti-parallel
Strand 3	C	819	820	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1121	1123	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1225	1227	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	93	102	parallel
Strand 3	D	313	319	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	253	255	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	334	336	anti-parallel
Strand 3	F	108	109	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	509	512	first strand
Strand 2	D	496	499	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	425	432	anti-parallel
Strand 5	D	522	524	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	443	first strand
Strand 2	D	514	516	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	604	first strand
Strand 2	D	624	629	parallel
Strand 3	D	657	662	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	894	first strand
Strand 2	D	954	956	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	924	925	first strand
Strand 2	D	930	932	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1070	1074	first strand
Strand 2	D	1057	1063	anti-parallel
Strand 3	D	1046	1050	anti-parallel
Strand 4	D	1086	1088	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1164	1165	first strand
Strand 2	D	1147	1151	anti-parallel
Strand 3	D	1185	1189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M84

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M84