Analysis of interatomic Contacts of Structural Units in PDB entry:
9M8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M8Q entry

There are 3 chains in PDB entry 9M8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7PHE 956
B
 A -30 C 25
C
 G 3 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9M8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 13Right-handed alpha
Helix 2
AA2
A
61 63Right-handed 310
Helix 3
AA3
A
99 109Right-handed alpha
Helix 4
AA4
A
118 147Right-handed alpha
Helix 5
AA5
A
165 171Right-handed alpha
Helix 6
AA6
A
176 180Right-handed 310
Helix 7
AA7
A
183 201Right-handed alpha
Helix 8
AA8
A
202 208Right-handed 310
Helix 9
AA9
A
224 243Right-handed alpha
Helix 10
AB1
A
265 290Right-handed alpha
Helix 11
AB2
A
291 300Right-handed alpha
Helix 12
AB3
A
305 318Right-handed alpha
Helix 13
AB4
A
328 338Right-handed alpha
Helix 14
AB5
A
343 348Right-handed alpha
Helix 15
AB6
A
351 354Right-handed 310
Helix 16
AB7
A
355 385Right-handed alpha
Helix 17
AB8
A
392 405Right-handed alpha
Helix 18
AB9
A
407 426Right-handed alpha
Helix 19
AC1
A
426 436Right-handed alpha
Helix 20
AC2
A
463 474Right-handed alpha
Helix 21
AC3
A
477 505Right-handed alpha
Helix 22
AC4
A
516 519Right-handed 310
Helix 23
AC5
A
520 535Right-handed alpha
Helix 24
AC6
A
544 556Right-handed alpha
Helix 25
AC7
A
561 573Right-handed alpha
Helix 26
AC8
A
588 597Right-handed alpha
Helix 27
AC9
A
601 606Right-handed alpha
Helix 28
AD1
A
607 609Right-handed 310
Helix 29
AD2
A
623 634Right-handed alpha
Helix 30
AD3
A
644 655Right-handed alpha
Helix 31
AD4
A
661 674Right-handed alpha
Helix 32
AD5
A
695 704Right-handed alpha
Helix 33
AD6
A
704 744Right-handed alpha
Helix 34
AD7
A
749 753Right-handed 310
Helix 35
AD8
A
758 765Right-handed alpha
Helix 36
AD9
A
774 792Right-handed alpha
Helix 37
AE1
A
797 805Right-handed alpha
Helix 38
AE2
A
808 827Right-handed alpha
Helix 39
AE3
A
831 834Right-handed 310
Helix 40
AE4
A
835 847Right-handed alpha
Helix 41
AE5
A
850 863Right-handed alpha
Helix 42
AE6
A
865 870Right-handed alpha
Helix 43
AE7
A
882 899Right-handed alpha
Helix 44
AE8
A
905 918Right-handed alpha
Helix 45
AE9
A
921 929Right-handed alpha
Helix 46
AF1
A
930 933Right-handed 310
Helix 47
AF2
A
935 942Right-handed alpha
Helix 48
AF3
A
944 949Right-handed alpha
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There are 3 sheets in PDB entry 9M8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
35 37anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
65 69anti-parallel
Strand 3
A
81 84anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
220 222anti-parallel
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