Analysis of interatomic Contacts of Structural Units in PDB entry:
9M8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M8T entry

There are 2 chains in PDB entry 9M8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 333
B
 MET 1ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9M8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 51Right-handed alpha
Helix 2
AA2
A
68 81Right-handed alpha
Helix 3
AA3
A
117 123Right-handed 310
Helix 4
AA4
A
126 134Right-handed alpha
Helix 5
AA5
A
152 164Right-handed alpha
Helix 6
AA6
A
180 185Right-handed alpha
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
207 220Right-handed alpha
Helix 9
AA9
A
220 235Right-handed alpha
Helix 10
AB1
A
250 252Right-handed 310
Helix 11
AB2
A
280 295Right-handed alpha
Helix 12
AB3
A
298 315Right-handed alpha
Helix 13
AB4
A
319 323Right-handed 310
Helix 14
AB5
A
325 333Right-handed alpha
Helix 15
AB6
B
38 51Right-handed alpha
Helix 16
AB7
B
68 82Right-handed alpha
Helix 17
AB8
B
117 123Right-handed 310
Helix 18
AB9
B
126 134Right-handed alpha
Helix 19
AC1
B
152 164Right-handed alpha
Helix 20
AC2
B
180 185Right-handed alpha
Helix 21
AC3
B
194 205Right-handed alpha
Helix 22
AC4
B
207 220Right-handed alpha
Helix 23
AC5
B
220 235Right-handed alpha
Helix 24
AC6
B
250 252Right-handed 310
Helix 25
AC7
B
280 295Right-handed alpha
Helix 26
AC8
B
298 316Right-handed alpha
Helix 27
AC9
B
325 331Right-handed alpha
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There are 4 sheets in PDB entry 9M8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
58 66parallel
Strand 3
A
2 6parallel
Strand 4
A
143 146parallel
Strand 5
A
168 171parallel
Strand 6
A
189 193parallel
Strand 7
A
244 248parallel
Strand 8
A
254 258anti-parallel
Strand 9
A
265 267anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
10 17anti-parallel
Strand 3
A
97 104parallel
Strand 4
A
111 116anti-parallel
Strand 5
B
26 28parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
B
112 116parallel
Strand 3
B
97 104anti-parallel
Strand 4
B
10 17parallel
Strand 5
B
31 37anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 91first strand
Strand 2
B
59 66parallel
Strand 3
B
3 6parallel
Strand 4
B
143 146parallel
Strand 5
B
168 171parallel
Strand 6
B
189 193parallel
Strand 7
B
244 248parallel
Strand 8
B
254 257anti-parallel
Strand 9
B
265 267anti-parallel
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