Analysis of interatomic Contacts of Structural Units in PDB entry:
9M8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M8U entry

There are 2 chains in PDB entry 9M8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45ARG 826
B
 GLY 45ARG 826
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9M8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 118Right-handed 310
Helix 2
AA2
A
302 316Right-handed alpha
Helix 3
AA3
A
317 336Right-handed alpha
Helix 4
AA4
A
443 473Right-handed alpha
Helix 5
AA5
A
498 501Right-handed 310
Helix 6
AA6
A
502 524Right-handed alpha
Helix 7
AA7
A
543 561Right-handed alpha
Helix 8
AA8
A
572 577Right-handed alpha
Helix 9
AA9
A
577 591Right-handed alpha
Helix 10
AB1
A
609 619Right-handed alpha
Helix 11
AB2
A
625 644Right-handed alpha
Helix 12
AB3
A
686 705Right-handed alpha
Helix 13
AB4
A
706 708Right-handed 310
Helix 14
AB5
A
716 740Right-handed alpha
Helix 15
AB6
A
745 767Right-handed alpha
Helix 16
AB7
A
778 782Right-handed 310
Helix 17
AB8
A
796 817Right-handed alpha
Helix 18
AB9
A
818 825Right-handed alpha
Helix 19
AC1
B
114 118Right-handed 310
Helix 20
AC2
B
302 316Right-handed alpha
Helix 21
AC3
B
317 336Right-handed alpha
Helix 22
AC4
B
443 473Right-handed alpha
Helix 23
AC5
B
498 501Right-handed 310
Helix 24
AC6
B
502 524Right-handed alpha
Helix 25
AC7
B
543 561Right-handed alpha
Helix 26
AC8
B
572 577Right-handed alpha
Helix 27
AC9
B
577 591Right-handed alpha
Helix 28
AD1
B
609 619Right-handed alpha
Helix 29
AD2
B
627 644Right-handed alpha
Helix 30
AD3
B
686 705Right-handed alpha
Helix 31
AD4
B
706 708Right-handed 310
Helix 32
AD5
B
716 740Right-handed alpha
Helix 33
AD6
B
745 767Right-handed alpha
Helix 34
AD7
B
778 782Right-handed 310
Helix 35
AD8
B
796 817Right-handed alpha
Helix 36
AD9
B
818 825Right-handed alpha
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There are 8 sheets in PDB entry 9M8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
157 165anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
125 128anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
145 151anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
103 107anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
291 299anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
243 247anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
257 264anti-parallel
Strand 3
A
213 217anti-parallel
Strand 4
A
236 240anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
157 165anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
125 128anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
145 151anti-parallel
Strand 3
B
93 98anti-parallel
Strand 4
B
103 107anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
291 299anti-parallel
Strand 3
B
200 205anti-parallel
Strand 4
B
243 247anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
257 264anti-parallel
Strand 3
B
213 217anti-parallel
Strand 4
B
236 240anti-parallel
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