Analysis of interatomic Contacts of Structural Units in PDB entry:
9M9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9M9E entry

There are 10 chains in PDB entry 9M9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	ARG 223
B	LEU 2	ILE 234
C	SER 28	ASP 1152
D	ASP 3	GLU 1277
E	GLY 27	GLY 108
F	GLN 67	ALA 242
G	G 3	G 49
H	C 1	C 47
I	C 1	A 7
M	ILE 2	ALA 160

There are121 helices in PDB entry 9M9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	220	Right-handed alpha
Helix 5	AA5	B	29	45	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	148	153	Right-handed alpha
Helix 9	AA9	B	203	224	Right-handed alpha
Helix 10	AB1	C	54	66	Right-handed alpha
Helix 11	AB2	C	67	78	Right-handed alpha
Helix 12	AB3	C	84	94	Right-handed alpha
Helix 13	AB4	C	118	126	Right-handed alpha
Helix 14	AB5	C	234	240	Right-handed alpha
Helix 15	AB6	C	244	253	Right-handed alpha
Helix 16	AB7	C	255	264	Right-handed alpha
Helix 17	AB8	C	269	282	Right-handed alpha
Helix 18	AB9	C	288	301	Right-handed alpha
Helix 19	AC1	C	309	321	Right-handed alpha
Helix 20	AC2	C	334	351	Right-handed alpha
Helix 21	AC3	C	380	405	Right-handed alpha
Helix 22	AC4	C	413	417	Right-handed 310
Helix 23	AC5	C	420	434	Right-handed alpha
Helix 24	AC6	C	444	452	Right-handed alpha
Helix 25	AC7	C	476	480	Right-handed 310
Helix 26	AC8	C	532	537	Right-handed alpha
Helix 27	AC9	C	589	594	Right-handed 310
Helix 28	AD1	C	596	600	Right-handed 310
Helix 29	AD2	C	601	612	Right-handed alpha
Helix 30	AD3	C	629	639	Right-handed alpha
Helix 31	AD4	C	739	744	Right-handed alpha
Helix 32	AD5	C	777	782	Right-handed alpha
Helix 33	AD6	C	815	826	Right-handed alpha
Helix 34	AD7	C	920	926	Right-handed alpha
Helix 35	AD8	C	928	943	Right-handed alpha
Helix 36	AD9	C	953	957	Right-handed 310
Helix 37	AE1	C	960	963	Right-handed 310
Helix 38	AE2	C	981	990	Right-handed alpha
Helix 39	AE3	C	1069	1080	Right-handed alpha
Helix 40	AE4	C	1082	1091	Right-handed alpha
Helix 41	AE5	C	1095	1109	Right-handed alpha
Helix 42	AE6	C	1118	1131	Right-handed alpha
Helix 43	AE7	D	16	23	Right-handed alpha
Helix 44	AE8	D	48	53	Right-handed alpha
Helix 45	AE9	D	84	90	Right-handed 310
Helix 46	AF1	D	103	108	Right-handed alpha
Helix 47	AF2	D	112	119	Right-handed alpha
Helix 48	AF3	D	121	130	Right-handed alpha
Helix 49	AF4	D	141	146	Right-handed 310
Helix 50	AF5	D	147	188	Right-handed alpha
Helix 51	AF6	D	193	221	Right-handed alpha
Helix 52	AF7	D	223	228	Right-handed alpha
Helix 53	AF8	D	237	239	Right-handed 310
Helix 54	AF9	D	240	246	Right-handed alpha
Helix 55	AG1	D	261	268	Right-handed alpha
Helix 56	AG2	D	269	284	Right-handed alpha
Helix 57	AG3	D	286	304	Right-handed alpha
Helix 58	AG4	D	308	311	Right-handed 310
Helix 59	AG5	D	321	325	Right-handed 310
Helix 60	AG6	D	339	342	Right-handed 310
Helix 61	AG7	D	343	359	Right-handed alpha
Helix 62	AG8	D	363	377	Right-handed alpha
Helix 63	AG9	D	393	397	Right-handed 310
Helix 64	AH1	D	402	406	Right-handed 310
Helix 65	AH2	D	411	417	Right-handed alpha
Helix 66	AH3	D	445	452	Right-handed alpha
Helix 67	AH4	D	452	463	Right-handed alpha
Helix 68	AH5	D	469	479	Right-handed alpha
Helix 69	AH6	D	482	492	Right-handed alpha
Helix 70	AH7	D	505	507	Right-handed 310
Helix 71	AH8	D	528	533	Right-handed alpha
Helix 72	AH9	D	548	558	Right-handed alpha
Helix 73	AI1	D	579	589	Right-handed alpha
Helix 74	AI2	D	614	623	Right-handed alpha
Helix 75	AI3	D	643	650	Right-handed alpha
Helix 76	AI4	D	668	675	Right-handed alpha
Helix 77	AI5	D	689	703	Right-handed alpha
Helix 78	AI6	D	705	726	Right-handed alpha
Helix 79	AI7	D	741	751	Right-handed alpha
Helix 80	AI8	D	751	762	Right-handed alpha
Helix 81	AI9	D	766	793	Right-handed alpha
Helix 82	AJ1	D	797	805	Right-handed alpha
Helix 83	AJ2	D	810	819	Right-handed alpha
Helix 84	AJ3	D	845	881	Right-handed alpha
Helix 85	AJ4	D	945	956	Right-handed alpha
Helix 86	AJ5	D	964	968	Right-handed 310
Helix 87	AJ6	D	976	980	Right-handed alpha
Helix 88	AJ7	D	994	1005	Right-handed alpha
Helix 89	AJ8	D	1006	1010	Right-handed 310
Helix 90	AJ9	D	1027	1036	Right-handed alpha
Helix 91	AK1	D	1117	1126	Right-handed alpha
Helix 92	AK2	D	1126	1145	Right-handed alpha
Helix 93	AK3	D	1150	1162	Right-handed alpha
Helix 94	AK4	D	1183	1190	Right-handed alpha
Helix 95	AK5	D	1209	1216	Right-handed alpha
Helix 96	AK6	D	1219	1225	Right-handed alpha
Helix 97	AK7	D	1228	1239	Right-handed alpha
Helix 98	AK8	D	1247	1254	Right-handed alpha
Helix 99	AK9	D	1260	1263	Right-handed 310
Helix 100	AL1	D	1264	1269	Right-handed alpha
Helix 101	AL2	E	32	36	Right-handed 310
Helix 102	AL3	E	38	44	Right-handed alpha
Helix 103	AL4	E	48	70	Right-handed alpha
Helix 104	AL5	E	89	100	Right-handed alpha
Helix 105	AL6	F	69	76	Right-handed alpha
Helix 106	AL7	F	77	81	Right-handed 310
Helix 107	AL8	F	83	104	Right-handed alpha
Helix 108	AL9	F	105	124	Right-handed alpha
Helix 109	AM1	F	125	127	Right-handed 310
Helix 110	AM2	F	131	153	Right-handed alpha
Helix 111	AM3	F	172	180	Right-handed alpha
Helix 112	AM4	F	183	193	Right-handed alpha
Helix 113	AM5	F	194	206	Right-handed alpha
Helix 114	AM6	F	210	218	Right-handed alpha
Helix 115	AM7	F	221	242	Right-handed alpha
Helix 116	AM8	M	52	57	Right-handed alpha
Helix 117	AM9	M	63	75	Right-handed alpha
Helix 118	AN1	M	84	97	Right-handed alpha
Helix 119	AN2	M	100	118	Right-handed alpha
Helix 120	AN3	M	121	144	Right-handed alpha
Helix 121	AN4	M	147	160	Right-handed alpha

There are 42 sheets in PDB entry 9M9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	171	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	144	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	116	117	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	15	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	186	198	anti-parallel
Strand 4	B	171	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	47	55	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	112	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	148	158	anti-parallel
Strand 4	M	45	48	anti-parallel
Strand 5	M	34	38	anti-parallel
Strand 6	M	22	23	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	190	first strand
Strand 2	C	199	205	anti-parallel
Strand 3	C	212	216	anti-parallel
Strand 4	C	222	226	anti-parallel
Strand 5	C	232	233	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel
Strand 4	C	541	542	parallel
Strand 5	C	558	562	anti-parallel
Strand 6	C	568	572	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	704	anti-parallel
Strand 3	C	687	688	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	653	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	667	671	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	683	684	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	893	899	anti-parallel
Strand 5	C	735	738	parallel
Strand 6	C	915	917	anti-parallel
Strand 7	C	717	723	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	760	first strand
Strand 2	C	865	877	anti-parallel
Strand 3	C	845	854	anti-parallel
Strand 4	C	795	796	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	806	807	first strand
Strand 2	C	833	834	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	522	524	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1133	1138	first strand
Strand 2	D	9	14	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	102	first strand
Strand 2	D	313	317	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	334	337	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	662	667	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	900	first strand
Strand 2	D	959	962	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	981	982	first strand
Strand 2	D	987	988	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1081	first strand
Strand 2	D	1061	1068	anti-parallel
Strand 3	D	1051	1055	anti-parallel
Strand 4	D	1104	1105	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1088	1090	first strand
Strand 2	D	1096	1098	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1182	first strand
Strand 2	D	1164	1165	anti-parallel
Strand 3	D	1205	1206	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1272	first strand
Strand 2	E	105	106	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	8	11	first strand
Strand 2	M	15	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9M9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9M9E