Analysis of interatomic Contacts of Structural Units in PDB entry:
9M9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9M9P entry

There are 2 chains in PDB entry 9M9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15MET 661
A
 PHE 663VAL 813
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9M9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
37 67Right-handed alpha
Helix 3
AA3
A
84 93Right-handed alpha
Helix 4
AA4
A
94 104Right-handed alpha
Helix 5
AA5
A
108 114Right-handed alpha
Helix 6
AA6
A
123 141Right-handed alpha
Helix 7
AA7
A
241 246Right-handed 310
Helix 8
AA8
A
251 255Right-handed 310
Helix 9
AA9
A
263 267Right-handed 310
Helix 10
AB1
A
278 303Right-handed alpha
Helix 11
AB2
A
310 314Right-handed alpha
Helix 12
AB3
A
323 325Right-handed 310
Helix 13
AB4
A
326 340Right-handed alpha
Helix 14
AB5
A
342 353Right-handed alpha
Helix 15
AB6
A
371 378Right-handed alpha
Helix 16
AB7
A
378 400Right-handed alpha
Helix 17
AB8
A
403 411Right-handed alpha
Helix 18
AB9
A
423 430Right-handed alpha
Helix 19
AC1
A
438 448Right-handed alpha
Helix 20
AC2
A
450 457Right-handed alpha
Helix 21
AC3
A
478 490Right-handed alpha
Helix 22
AC4
A
496 505Right-handed 310
Helix 23
AC5
A
508 536Right-handed alpha
Helix 24
AC6
A
557 575Right-handed alpha
Helix 25
AC7
A
595 613Right-handed alpha
Helix 26
AC8
A
631 639Right-handed alpha
Helix 27
AC9
A
640 642Right-handed 310
Helix 28
AD1
A
657 666Right-handed alpha
Helix 29
AD2
A
676 686Right-handed alpha
Helix 30
AD3
A
696 707Right-handed alpha
Helix 31
AD4
A
709 717Right-handed alpha
Helix 32
AD5
A
717 730Right-handed alpha
Helix 33
AD6
A
740 749Right-handed alpha
Helix 34
AD7
A
759 775Right-handed alpha
Helix 35
AD8
A
776 790Right-handed alpha
Helix 36
AD9
A
795 807Right-handed alpha
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There are 5 sheets in PDB entry 9M9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 192first strand
Strand 2
A
209 221anti-parallel
Strand 3
A
228 238anti-parallel
Strand 4
A
144 149parallel
Strand 5
A
71 75parallel
Strand 6
A
315 319parallel
Strand 7
A
354 357parallel
Strand 8
A
433 436parallel
Strand 9
A
461 463parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 161first strand
Strand 2
A
164 168anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
202 206anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
420 422anti-parallel
Strand 3
A
413 414anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 626first strand
Strand 2
A
583 588parallel
Strand 3
A
544 549parallel
Strand 4
A
644 647parallel
Strand 5
A
669 672parallel
Strand 6
A
691 692parallel
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