Analysis of interatomic Contacts of Structural Units in PDB entry:
9MA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MA8 entry

There are 4 chains in PDB entry 9MA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 608
A
 ALA 610ASN 852
E
 MET 1GLU 608
E
 ALA 610ASN 852
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 9MA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 26Right-handed 310
Helix 2
AA2
A
27 35Right-handed alpha
Helix 3
AA3
A
36 40Right-handed 310
Helix 4
AA4
A
41 52Right-handed alpha
Helix 5
AA5
A
52 59Right-handed alpha
Helix 6
AA6
A
62 70Right-handed alpha
Helix 7
AA7
A
71 81Right-handed alpha
Helix 8
AA8
A
81 100Right-handed alpha
Helix 9
AA9
A
128 144Right-handed alpha
Helix 10
AB1
A
234 239Right-handed 310
Helix 11
AB2
A
245 268Right-handed alpha
Helix 12
AB3
A
278 281Right-handed 310
Helix 13
AB4
A
282 295Right-handed alpha
Helix 14
AB5
A
299 309Right-handed alpha
Helix 15
AB6
A
319 323Right-handed 310
Helix 16
AB7
A
327 335Right-handed alpha
Helix 17
AB8
A
338 343Right-handed alpha
Helix 18
AB9
A
345 353Right-handed alpha
Helix 19
AC1
A
366 373Right-handed alpha
Helix 20
AC2
A
381 392Right-handed alpha
Helix 21
AC3
A
420 431Right-handed alpha
Helix 22
AC4
A
432 436Right-handed 310
Helix 23
AC5
A
441 446Right-handed alpha
Helix 24
AC6
A
447 451Right-handed 310
Helix 25
AC7
A
452 482Right-handed alpha
Helix 26
AC8
A
488 493Right-handed alpha
Helix 27
AC9
A
494 496Right-handed 310
Helix 28
AD1
A
510 514Right-handed 310
Helix 29
AD2
A
521 530Right-handed alpha
Helix 30
AD3
A
548 563Right-handed alpha
Helix 31
AD4
A
578 589Right-handed alpha
Helix 32
AD5
A
604 606Right-handed 310
Helix 33
AD6
A
607 613Right-handed alpha
Helix 34
AD7
A
624 629Right-handed alpha
Helix 35
AD8
A
645 664Right-handed alpha
Helix 36
AD9
A
665 670Right-handed alpha
Helix 37
AE1
A
678 692Right-handed alpha
Helix 38
AE2
A
693 696Right-handed 310
Helix 39
AE3
A
697 709Right-handed alpha
Helix 40
AE4
A
710 741Right-handed alpha
Helix 41
AE5
A
841 845Right-handed 310
Helix 42
AE6
E
26 35Right-handed alpha
Helix 43
AE7
E
36 39Right-handed 310
Helix 44
AE8
E
41 52Right-handed alpha
Helix 45
AE9
E
52 59Right-handed alpha
Helix 46
AF1
E
62 70Right-handed alpha
Helix 47
AF2
E
71 81Right-handed alpha
Helix 48
AF3
E
82 101Right-handed alpha
Helix 49
AF4
E
133 143Right-handed alpha
Helix 50
AF5
E
235 239Right-handed 310
Helix 51
AF6
E
245 267Right-handed alpha
Helix 52
AF7
E
282 296Right-handed alpha
Helix 53
AF8
E
299 310Right-handed alpha
Helix 54
AF9
E
319 323Right-handed 310
Helix 55
AG1
E
329 334Right-handed alpha
Helix 56
AG2
E
337 343Right-handed alpha
Helix 57
AG3
E
345 354Right-handed alpha
Helix 58
AG4
E
365 374Right-handed alpha
Helix 59
AG5
E
381 392Right-handed alpha
Helix 60
AG6
E
393 397Right-handed 310
Helix 61
AG7
E
420 431Right-handed alpha
Helix 62
AG8
E
432 439Right-handed 310
Helix 63
AG9
E
441 446Right-handed alpha
Helix 64
AH1
E
447 451Right-handed 310
Helix 65
AH2
E
452 482Right-handed alpha
Helix 66
AH3
E
485 487Right-handed 310
Helix 67
AH4
E
488 496Right-handed alpha
Helix 68
AH5
E
516 520Right-handed 310
Helix 69
AH6
E
521 530Right-handed alpha
Helix 70
AH7
E
549 563Right-handed alpha
Helix 71
AH8
E
578 589Right-handed alpha
Helix 72
AH9
E
605 611Right-handed alpha
Helix 73
AI1
E
624 629Right-handed alpha
Helix 74
AI2
E
645 664Right-handed alpha
Helix 75
AI3
E
664 670Right-handed alpha
Helix 76
AI4
E
678 692Right-handed alpha
Helix 77
AI5
E
693 696Right-handed 310
Helix 78
AI6
E
697 709Right-handed alpha
Helix 79
AI7
E
709 741Right-handed alpha
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There are 15 sheets in PDB entry 9MA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
273 276parallel
Strand 3
A
311 314parallel
Strand 4
A
376 378parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
218 224parallel
Strand 3
A
204 215anti-parallel
Strand 4
A
185 186anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
218 224parallel
Strand 3
A
204 215anti-parallel
Strand 4
A
196 201anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
170 173anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
364 365anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
536 541parallel
Strand 3
A
501 506parallel
Strand 4
A
591 594parallel
Strand 5
A
616 619parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 751first strand
Strand 2
A
767 771anti-parallel
Strand 3
A
811 815anti-parallel
Strand 4
A
803 808anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 759first strand
Strand 2
E
15 19parallel
Strand 3
A
824 832anti-parallel
Strand 4
A
781 791anti-parallel
Strand 5
A
794 801anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
149 153first strand
Strand 2
E
218 224parallel
Strand 3
E
204 215anti-parallel
Strand 4
E
185 186anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
149 153first strand
Strand 2
E
218 224parallel
Strand 3
E
204 215anti-parallel
Strand 4
E
196 201anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
162 164first strand
Strand 2
E
170 172anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
275 276first strand
Strand 2
E
312 314parallel
Strand 3
E
376 379parallel
Strand 4
E
407 408parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
571 573first strand
Strand 2
E
536 540parallel
Strand 3
E
501 504parallel
Strand 4
E
591 594parallel
Strand 5
E
616 620parallel
Strand 6
E
635 637parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
746 747first strand
Strand 2
E
768 771anti-parallel
Strand 3
E
811 815anti-parallel
Strand 4
E
803 808anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
794 801first strand
Strand 2
E
780 791anti-parallel
Strand 3
E
826 833anti-parallel
Strand 4
E
849 851anti-parallel
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