Analysis of interatomic Contacts of Structural Units in PDB entry:
9MAN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MAN entry

There are 4 chains in PDB entry 9MAN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 35SER 133
B
 PRO 36SER 133
D
 SER 126ARG 215
C
 SER 126ARG 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9MAN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
128 135Right-handed alpha
Helix 2
AA2
D
140 142Right-handed 310
Helix 3
AA3
D
143 157Right-handed alpha
Helix 4
AA4
D
165 172Right-handed alpha
Helix 5
AA5
D
178 182Right-handed 310
Helix 6
AA6
D
188 196Right-handed alpha
Helix 7
AA7
D
206 215Right-handed alpha
Helix 8
AA8
C
128 135Right-handed alpha
Helix 9
AA9
C
136 138Right-handed 310
Helix 10
AB1
C
140 142Right-handed 310
Helix 11
AB2
C
143 157Right-handed alpha
Helix 12
AB3
C
165 172Right-handed alpha
Helix 13
AB4
C
178 182Right-handed 310
Helix 14
AB5
C
188 196Right-handed alpha
Helix 15
AB6
C
197 201Right-handed 310
Helix 16
AB7
C
205 215Right-handed alpha
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There are 7 sheets in PDB entry 9MAN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
60 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
101 110anti-parallel
Strand 3
A
116 123anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
73 77anti-parallel
Strand 3
B
60 67anti-parallel
Strand 4
B
40 46anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
126 130anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
101 109anti-parallel
Strand 3
B
116 123anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 77first strand
Strand 2
B
89 92anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
126 130anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il